Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10408 ATGGCTTCTTCATCCTCAAATTCCAATCCCCAATGGATCTACGATGTGTTCATCAATTTCAGGGGAGTAGACACTCGTAAGAACTTAGTTCGTGACCTCTATGCTGCGCTCTCAAATGCCGGAATCAACACATTCGTTGACCAGAGGATTCGCAAGGGAACAGAGCTGAAACCAGAACTAGTTGGAGCAATAGAAGGGTCTCAGATATCACTAGTTGTTTTCTCCCAAAACTATATTGGATCTAGTTGGTGTCTTGATGAACTGGTAAAAATCATGGAATGCCGCAGAACTTATGGCCAGGTGGTTGTGCCCATATTTTACCGCGTTGATCCATCGGTCGTGCGTCATCAGACTGGTGCATTTGGAGAAACTTTGAAAGCAATGGCCACAAAAAGATACTCAGGGGAACTGATGATTCATGTGTTGTCAGGGTGGAGACGTGCTCTCACCGAAGCTGCAAATTTGTCTGGTTGGGATGCGACGGCATTCAGGCATGATGGTAAACTAGTGGAGCAAATTGTTGAGCACGTTTTGACAACAATATTTCAACCATTGCCTATTACTGAATTTCCGGTTGGATTAGAATCCCGTGTGCAAGAAGTGATTCGGTTGATTGAAAATCATTCAAGCGAGGTTTGTATAATAGGGATATGGGGAATGGGAGGATCGGGTAAAACAACCCTAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTGTGTTTAGAAACTTCATTGAAAATATTAGAGAGGTTTGTGAGGAAGATATTAGAGGGCGTATTCACTTACAAGAACAACTTCTTTCACATGTCCTAGAACCAAAGGAGAAGATACATAGCATCGCGATTGGGACAACTATGATCCAGAAAAGACTTTCCGGAAAAAAGGCACTTGTTGTACTTGATGACGTGACCACACATCAGCAATTAAAAGCCCTCTGTGGAAATCGTAAATGGTTTGGTGCAGGAACTGTAGTAATTGTTACAACCAGAGATGAACGCCTACTTAATTTACTTAAAGTTGACCATATATGTAGATCCAAGGAAATGAACAAAAATGAGTCTCTTGAACTTTTCAGTAAGCATGCTTTTAGAGAAGCAAGTCAAAGACAAGACTTCTCTAGTCTCTCAAGAAACGTAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATGTGACAGGACAAAAGGAGAATGGAAAAGTGTATTGTCAAAACTAAAGAGAATTCCTAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATAATGGTTTGGATGACACTGAAAAGGATATATTTCTTGACATTTGCTGTTTCTTCATTGGTAAGGACAGAGCCTATGTTACAGAAATACTAAATGGCTGTGAACTTTATGCTGATATTGGAATAACTGTCCTCATAGAGCGGAGCCTCGTAAAAGTTGAAAAGAAGAACAAGCTTGGAATGCATGATTTGGTACGAGACATGGGAAGAGAAATTATTCGTAGAAGTTCACCACAAAAGCCTGAGAAACGTAGTCGATTGTGGTTTCACGAGGATGTACAAGATGTTTTGGCGAAAAACAATGGAACAGAAACTATTGAGGGATTGAAGTTGCAACGAACATGCAGAGTCAGGTTCAGTACTAATGCTTTCAAGGAAATGAATAGACTGAGACTTTTACAATTTAATCGTGTTGACCTCACTGGAGATTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTACCTTCACCATTATACCTGATGACTTTGATCTCGGACATCTAGTTGTTATTGACTTAAAATACAGCAATATTCAACAACTTTGGAAGGAAACCAAGTTGCTGGAGAAGCTGAAAATCCTCAATCTCAGTCATTCCAGGTACTTGAAAAACACCCCTGACTTTTCCAAACTACCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCGAGTTTGTCAAAGGTAGACGAGTCCATTGGAGATCTGAGTAATCTTGTTCTAATAAATTTGAAGGACTGTACAAGCCTTAGCAATCCCCCAGGGAATATCTATAAGTTAAAAACTGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGTGCAGATGAAATCCTTGACAACATTGATTGCAAAAGACACAGCTATAAAAGAAGTGCCCTATTCAATAATAAGATCAAAAAGCATTGGATATATATCTCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGACGTCACCAACAATGAATCCCTTCTCCCATATTCATCCATTTGACGGCATGTTATCGTCTCTAGTATCCGTGAATGTAGAGAACAATAATTTGGGCAATCTATCACCAATACTTAGCAGCCTTTCAAAACTTAGAAGCTTTTGGGTACAATGTCGATCAGAGATTCAACTAACTCAGGAATTAAGAACATTTCTTGATGATTTATATGACAGAAATTTTACTGAAATGGAAACAACGGCACATGCATCACAATCGCTTTTGATTGGAATGGGAAGTTACCATGGTGTCGTTGATGCTCTCGGCAAAACCATATCACAGGGATTGACAACCAATGATTCTAGTAATATTTTCCTTCCGGGTGATAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACAGTGATTGTCGCAAAAAGGGAATAATTTTGTGTGTAGTTTATTCATCAACACCTGAAAACATTGCAAATGAATGTCTGTGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCAGATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGCAGAGTGTAATATCAAATCTAGGAGCTGGTGACACTGTGGAGATTCTTGTAGCTTTTGGGCATGGATTGATTGTTAAGGAGATAGTTGTCTATCTAATATCTGACCAGTCAATTACTATGGAAATTGAGTCCTTAAGTATTATGGAAGTTGAGCCATCAACTAACATGAAAATGGATCCATTGCCTGAACCTGAAGTGGATGAGCAGCCATCACCTGAAATGGACGGGAAACCATCACCTAATGTGAAAATGGAGCCTTCTCATGATGTAGAAACTGAGCCATCACATAAGCCAAATAAAAATATCTTTACAGGACTTAAAAAGAGAGTGGGAGAATGTTTATGTTTGAACCACAAATAG 3249 0.3903 MASSSSNSNPQWIYDVFINFRGVDTRKNLVRDLYAALSNAGINTFVDQRIRKGTELKPELVGAIEGSQISLVVFSQNYIGSSWCLDELVKIMECRRTYGQVVVPIFYRVDPSVVRHQTGAFGETLKAMATKRYSGELMIHVLSGWRRALTEAANLSGWDATAFRHDGKLVEQIVEHVLTTIFQPLPITEFPVGLESRVQEVIRLIENHSSEVCIIGIWGMGGSGKTTLAKAIYNQIHRKFVFRNFIENIREVCEEDIRGRIHLQEQLLSHVLEPKEKIHSIAIGTTMIQKRLSGKKALVVLDDVTTHQQLKALCGNRKWFGAGTVVIVTTRDERLLNLLKVDHICRSKEMNKNESLELFSKHAFREASQRQDFSSLSRNVVAYCGGLPLALEVLGSYLCDRTKGEWKSVLSKLKRIPNDQVQEKLRISYNGLDDTEKDIFLDICCFFIGKDRAYVTEILNGCELYADIGITVLIERSLVKVEKKNKLGMHDLVRDMGREIIRRSSPQKPEKRSRLWFHEDVQDVLAKNNGTETIEGLKLQRTCRVRFSTNAFKEMNRLRLLQFNRVDLTGDYGYLSKELRWVNWQRSTFTIIPDDFDLGHLVVIDLKYSNIQQLWKETKLLEKLKILNLSHSRYLKNTPDFSKLPNLEKLILKDCPSLSKVDESIGDLSNLVLINLKDCTSLSNPPGNIYKLKTVKTLILSGCSKIDKLEEDIVQMKSLTTLIAKDTAIKEVPYSIIRSKSIGYISLCGYEGLSRDVFPSLIWSWTSPTMNPFSHIHPFDGMLSSLVSVNVENNNLGNLSPILSSLSKLRSFWVQCRSEIQLTQELRTFLDDLYDRNFTEMETTAHASQSLLIGMGSYHGVVDALGKTISQGLTTNDSSNIFLPGDNYPSWLAYKGEGPSVHFQVPEDSDCRKKGIILCVVYSSTPENIANECLCSVLIINYTKLTIQIYKRDTVMSFNDEDWQSVISNLGAGDTVEILVAFGHGLIVKEIVVYLISDQSITMEIESLSIMEVEPSTNMKMDPLPEPEVDEQPSPEMDGKPSPNVKMEPSHDVETEPSHKPNKNIFTGLKKRVGECLCLNHK. 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10408 1082 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 183 - -
Seca4g10408 1082 Pfam TIR domain 14 178 IPR000157 GO:0007165
Seca4g10408 1082 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 742 IPR044974 GO:0006952
Seca4g10408 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 443 IPR027417 -
Seca4g10408 1082 PRINTS Disease resistance protein signature 619 635 - -
Seca4g10408 1082 PRINTS Disease resistance protein signature 384 398 - -
Seca4g10408 1082 PRINTS Disease resistance protein signature 291 305 - -
Seca4g10408 1082 PRINTS Disease resistance protein signature 214 229 - -
Seca4g10408 1082 SMART till_3 13 155 IPR000157 GO:0007165
Seca4g10408 1082 Pfam NB-ARC domain 198 424 IPR002182 GO:0043531
Seca4g10408 1082 Gene3D - 349 433 IPR042197 -
Seca4g10408 1082 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Seca4g10408 1082 MobiDBLite consensus disorder prediction 1045 1059 - -
Seca4g10408 1082 Gene3D Ribonuclease Inhibitor 532 852 IPR032675 -
Seca4g10408 1082 SUPERFAMILY L domain-like 489 816 - -
Seca4g10408 1082 Gene3D - 11 177 IPR035897 -
Seca4g10408 1082 MobiDBLite consensus disorder prediction 1016 1065 - -
Seca4g10408 1082 Gene3D - 178 344 IPR027417 -
Seca4g10408 1082 SMART AAA_5 211 351 IPR003593 GO:0016887
Seca4g10408 1082 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10408 Seca-Chr4 239595703 239600845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10408 14 736 WRKY Transcription Factor Family AT4G12020 30.054 1.83e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10408 - - tpra:123923836 1268.06