Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10405 ATGTATGGACGCCAATGGATATACGACGTGTTCATCAATTTCAGGGGAGAAGACACTCGTCAAAATTTCGTTTCCCATCTCTATGCCGCCCTCTCAAATGCGGGAATCAACACCTTTCTTGACGATGAGAAGCTTGAAAGGGGAGAGGAGCTGAAAGAAACTTTATGTCAAGCAATACGAGGGTCTCGTATATCTCTGGTTGTTTTCTCCGAAACCTATGCTGAATCTTCTTGGTGTCTTTACGAGCTGCAAAATATCATGCAATGCCACAAAACTTATGGCCAGGTGGTTATACCTATTTTTTACCATGTTGACCCATCGGATGTACGTCATCGGAAAGGTGCTTTTGGCGAAGCTTTGAAAACACTCTCCGCAACAAAATCAGGATTGGCGACATGGGGGTATGACCTCACTCAAGCTGCAAATTTGTCTGGTTGGGATGTGAGAAATTGGAGGAGTGAAGCTGAATTAGTGAAGAAAATTGTTGAGGATGTTTTGGCAAAACTTGACACCACACTCTTATCTACCACTGAATTTCCGGTTGGATTAGAATCCCGTGTGCAAGAAATGATTCGGTTGATTACAGATCGTTCAAGCAAAGTTTGTATAGTCGGGATTTGGGGAATGGGAGGGTCGGGTAAGACAACAACAGCCAAAGCCATCTACAATCAATTTCAACGCAAATTTGAGGATAAGAGTTTCATTGAAAATATTAGGGAAGTTTGTGAAAATGATAAAGGAGGGTGTATTCATCTGCAGAAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTGAAGATCCAAAGTATTGCGTCGGGGACAATTAAGATCCGGAAAAGTCTTTGTGTGAGAAAGCTCCTAGTTGTACTAGATGATATAAACAAGCTTGAGCAATTGAAAACCTTATGTGGGAACCGTAACTGGTTCGGTCCAGGAAGTTTATTAATTGTTACAACTAGAGATGTGCGCCTTCTTAATTTACTTAAAGTTGACCATGTCTATAAAATGGAGGAAATGGACCCAAATGAATCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAATCAAGTCCAACAGAAGACTTCAGTGAACTCTCAAAAAGTGTAGTTGCTTACTGTGGGGGATTACCACTAGCTCTTGAAGTTATTGGATCTTACTTATATGAAAGGACAAAACCAGAATGGAGCAGTGTAATATTAAAACTAGGAAGAATTCCACATGATCAAGTGCAAGAGAAGTTGAGAATGAGCTATGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATTTGTTGTTTCTTCATTGGTAAGGACAGAGCCTATGTTACGGAGATATTAAATGGCTGTGGCTTTTATGCTGATATTGGAATAACAGTCCTCATTGAGCGGAGCCTCTTAAAAGTTGAAAAGAATAACAAGCTTGGAATGCATAATTTGCTACGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCAATGAAAGAGCCTGGGAAGCGTAGTCGTTTATGGTTTCACGAGGATGTACATGATGTTTTGACAAAAAATACTGGAACAGAAACTATTGAGGGATTGAAGTTGCAAAGAACAGGCAGAGTCAGGTTCAGTACTAATGCTTTCAAGGAAATGAATAGACTGAGACTTTTACATCTTGATCGTGTTGACCTCACTGGATATTATGGGTATCTTTCCAAAGAACTGAGATGGGTCAATTGGCAACGATCTATCTTCAGATATATACCTGATGACTTTGATCTCGGACATCTAGTTGTTATTGACTTAAAATACAGCAATATTGAACAACTTTGGAAGGAAACCAAGATGCTGGAGAAGCTGAAAATCCTCAATCTCAGTCATTCTAGGTACTTGAAAATCACCCCTGACTTTTCCAAACTACCAAATCTAGAAAAACTCATTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACACCAGTCCATTGGAGATCTCAAAAATCTTATTTTGATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATAAGTTAAAATCTGTGGAAACCTTGATCCTTTCTGGTTGTTCAAAGATTGACAAGTTAGAAGAAGATATAGTGCAGATGGAATCCTTGACAACATTGATTGCAAAAGGTACAGCTGTAAAAGAAGTGCCTCATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGACGTCACCAACAATGAATCCCTTCTCCCATATTCATCCATTATCCGTGAATGTAGAGAACAATAATTTGGGCAATCTATCACCAATACTTAGCAGCCTTTCAAAACTTAGAAGCTTTTGGGTACAATGCCATTCAGAGGTTGAACTAACTCAGCAATTAAGAAGTTTCCTTGATGATTTGTATGACGGAAATTTTACTGAAATGGAAACAACGGCACATGCATCACAAATCTCAAATCTTTCCTTGAGATCACTTTTGATTGGAATGGGGAGTTACCATGGTGTCGTTGATGTTCTTGGGAAGACCATATCACAGGGATTGACAACCAATGATTCTAGTAATATTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTACATTTTCAAGTACCTGAGGACAGTGATTGTCGCAAAAAGGGAATAATTTTGTGTGTAGTTTATTCATCAACACCTGAAAACATGGCAAATGGATGTCTGAGTAGTGTCTTAATCATTAATTACACAAAGTTAACCATCCAGATATACAAGCAAGACACAGTAATGTCCTTTACTGATGAAGATTGGCAGAATGTAATATCAAATCTAGGAGCTGGTGACACTGTGGAGATTCTTGTAGCTTTTGGGCATGGATTGATTGTTAAGGACATAGCTGTCTATCTAATATCTGACCAGTCAATTACTATGGAAATTGAGTCGTCAAGTATTATGGAAGTTGAGCCATTCACCAACAAGAAAATGGAGTTGTTGCCTGCAGTGGATGTGCAGCCATCACCTAATGTCAAAACGGAGTCATCACAAGAAGTGAACGTGCAGCCATCACCTAATGTGAAAATGGAGCCTTTTCATGACATAGAAACTGAGCCATCACTGAAGCCAAATAAAAATATCTTTACAAGACTTAAAAAGAGAATGGGAGAATGTTTGTGCTTGAACCAGAAATAG 3234 0.3887 MYGRQWIYDVFINFRGEDTRQNFVSHLYAALSNAGINTFLDDEKLERGEELKETLCQAIRGSRISLVVFSETYAESSWCLYELQNIMQCHKTYGQVVIPIFYHVDPSDVRHRKGAFGEALKTLSATKSGLATWGYDLTQAANLSGWDVRNWRSEAELVKKIVEDVLAKLDTTLLSTTEFPVGLESRVQEMIRLITDRSSKVCIVGIWGMGGSGKTTTAKAIYNQFQRKFEDKSFIENIREVCENDKGGCIHLQKQLLSDVLKTKVKIQSIASGTIKIRKSLCVRKLLVVLDDINKLEQLKTLCGNRNWFGPGSLLIVTTRDVRLLNLLKVDHVYKMEEMDPNESLELFSWHAFRESSPTEDFSELSKSVVAYCGGLPLALEVIGSYLYERTKPEWSSVILKLGRIPHDQVQEKLRMSYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGFYADIGITVLIERSLLKVEKNNKLGMHNLLRDMGREIVRQSSMKEPGKRSRLWFHEDVHDVLTKNTGTETIEGLKLQRTGRVRFSTNAFKEMNRLRLLHLDRVDLTGYYGYLSKELRWVNWQRSIFRYIPDDFDLGHLVVIDLKYSNIEQLWKETKMLEKLKILNLSHSRYLKITPDFSKLPNLEKLILKDCPSLSEVHQSIGDLKNLILINLKDCTSLSNLPRKIYKLKSVETLILSGCSKIDKLEEDIVQMESLTTLIAKGTAVKEVPHSIVRSKSIGYISLCGYEGLSRDVFPSLIWSWTSPTMNPFSHIHPLSVNVENNNLGNLSPILSSLSKLRSFWVQCHSEVELTQQLRSFLDDLYDGNFTEMETTAHASQISNLSLRSLLIGMGSYHGVVDVLGKTISQGLTTNDSSNIFLPGDNYPSWLAYKGEGPSVHFQVPEDSDCRKKGIILCVVYSSTPENMANGCLSSVLIINYTKLTIQIYKQDTVMSFTDEDWQNVISNLGAGDTVEILVAFGHGLIVKDIAVYLISDQSITMEIESSSIMEVEPFTNKKMELLPAVDVQPSPNVKTESSQEVNVQPSPNVKMEPFHDIETEPSLKPNKNIFTRLKKRMGECLCLNQK. 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10405 1077 SUPERFAMILY "Winged helix" DNA-binding domain 409 515 IPR036390 -
Seca4g10405 1077 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
Seca4g10405 1077 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 146 IPR035897 -
Seca4g10405 1077 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 724 IPR044974 GO:0006952
Seca4g10405 1077 MobiDBLite consensus disorder prediction 1021 1037 - -
Seca4g10405 1077 Gene3D - 173 333 IPR027417 -
Seca4g10405 1077 Gene3D Ribonuclease Inhibitor 509 843 IPR032675 -
Seca4g10405 1077 MobiDBLite consensus disorder prediction 1019 1044 - -
Seca4g10405 1077 Pfam NB-ARC domain 192 418 IPR002182 GO:0043531
Seca4g10405 1077 SUPERFAMILY L domain-like 495 805 - -
Seca4g10405 1077 SMART till_3 7 200 IPR000157 GO:0007165
Seca4g10405 1077 Gene3D - 2 172 IPR035897 -
Seca4g10405 1077 PRINTS Disease resistance protein signature 609 625 - -
Seca4g10405 1077 PRINTS Disease resistance protein signature 203 218 - -
Seca4g10405 1077 PRINTS Disease resistance protein signature 373 387 - -
Seca4g10405 1077 PRINTS Disease resistance protein signature 280 294 - -
Seca4g10405 1077 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 171 - -
Seca4g10405 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 433 IPR027417 -
Seca4g10405 1077 Gene3D - 339 422 IPR042197 -
Seca4g10405 1077 Pfam TIR domain 8 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10405 Seca-Chr4 239579241 239585024 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10405 8 726 WRKY Transcription Factor Family AT4G12020 32.206 5.30e-89 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10405 - - gmx:100813173 1305.04