Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10401 ATGGGGCCAAACGCATTGACGGCTAAACAAGCGGAGCAGCTCAGAATAGACGGCAACACTTGCTTTAAGAAAGACCGTTTCGGAGCTGCCATCGATGCTTACACAGAGGCAATTACGCTGTGCCCCAATGTTCCGATTTATTGGACAAATCGTGCTCTCTGTCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGACTGTCGGAGAGCAATTCAGTTGGACAACAGTTCGGTTAAGAACAGCGCAGAGAAAGAAAGTAGAACACAACTGGAACAGTGCGGAGGCAGTTTGAACAGGCAGAATCGCACTCGCATGGTCTGTTCGCAGAGGGCACTTGCAGTTCACAGCAGAAGCTTTGCCGTTTGCACAGTCTTGCAGAGGGAGTTTGCTGAGGCAGCTTGTTGTTTGCAGTTCGTGAGCAGAAAATGCAAGCAATCTACCAGAAGAGAGGGGAGAGAGATCAACGGTAGATCAAAGGCTAAGAGGGAAGGGATTTAG 501 0.493 MGPNALTAKQAEQLRIDGNTCFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDCRRAIQLDNSSVKNSAEKESRTQLEQCGGSLNRQNRTRMVCSQRALAVHSRSFAVCTVLQREFAEAACCLQFVSRKCKQSTRREGREINGRSKAKREGI. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10401 166 SUPERFAMILY TPR-like 8 81 IPR011990 GO:0005515
Seca4g10401 166 SMART tpr_5 45 78 IPR019734 GO:0005515
Seca4g10401 166 SMART tpr_5 11 44 IPR019734 GO:0005515
Seca4g10401 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 82 IPR045200 GO:0000209|GO:0061630
Seca4g10401 166 Gene3D Tetratricopeptide repeat domain 8 112 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10401 Seca-Chr4 239568213 239569749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10401 6 80 U-box Gene Family AT3G07370 72.000 7.70e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10401 K09561 - gmx:100796519 153.295