LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g10400	ATGTTGGGACTTGCATTGCTCCAAAGACAAGACTATGCAAAAGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAACCCCAAGGGATATATGGTAGAAGAAATATGGCATGAACTTGCAAAGGCAAAATACCAAGAGTGGGAACGTTCATCGACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAGCATTTTCTCGATGTCTCCGAAATGGAAGGATTTATAGATGATGCTGATACTTCCCATTTGGAACAATTAGACACTTTACGTAGAGTTTTTAATAAAGCTGCAGAGGCTGACATACCAGCTGAGGTGCCAGATTATCTATGCTGCAGAATCACTCTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTAAATTTGACCCGGTCACACGGGAACCACTTGATCCATCACAGCTAGTACCAAACTTGGCCATTAAGGAAGCAGTCCAGGCATTCCTAGATGAACATGGGTGGGCCTACAAGGTAGACTAA	588	0.4354	MLGLALLQRQDYAKGIRELEKALDLGRGANPKGYMVEEIWHELAKAKYQEWERSSTKRSWELQSLKEACESALKEKHFLDVSEMEGFIDDADTSHLEQLDTLRRVFNKAAEADIPAEVPDYLCCRITLDIFHDPVITPSGLTYERAVILDHLQKVGKFDPVTREPLDPSQLVPNLAIKEAVQAFLDEHGWAYKVD.	196

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g10400	195	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	1	193	IPR045200	GO:0000209\|GO:0061630
	Seca4g10400	195	CDD	RING-Ubox_CHIP	118	188	IPR045202	-
	Seca4g10400	195	SUPERFAMILY	RING/U-box	112	192	-	-
	Seca4g10400	195	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	194	IPR013083	-
	Seca4g10400	195	Pfam	U-box domain	118	190	IPR003613	GO:0004842\|GO:0016567
	Seca4g10400	195	ProSiteProfiles	U-box domain profile.	117	191	IPR003613	GO:0004842\|GO:0016567
	Seca4g10400	195	SMART	Ubox_2	121	184	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g10400	Seca-Chr4	239565209	239566966	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g10400	1	194	U-box Gene Family	AT3G07370	66.495	3.78e-96	279

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g10400	K09561		-	gmx:100796519	348.206

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