Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10400 ATGTTGGGACTTGCATTGCTCCAAAGACAAGACTATGCAAAAGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAACCCCAAGGGATATATGGTAGAAGAAATATGGCATGAACTTGCAAAGGCAAAATACCAAGAGTGGGAACGTTCATCGACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAGCATTTTCTCGATGTCTCCGAAATGGAAGGATTTATAGATGATGCTGATACTTCCCATTTGGAACAATTAGACACTTTACGTAGAGTTTTTAATAAAGCTGCAGAGGCTGACATACCAGCTGAGGTGCCAGATTATCTATGCTGCAGAATCACTCTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTAAATTTGACCCGGTCACACGGGAACCACTTGATCCATCACAGCTAGTACCAAACTTGGCCATTAAGGAAGCAGTCCAGGCATTCCTAGATGAACATGGGTGGGCCTACAAGGTAGACTAA 588 0.4354 MLGLALLQRQDYAKGIRELEKALDLGRGANPKGYMVEEIWHELAKAKYQEWERSSTKRSWELQSLKEACESALKEKHFLDVSEMEGFIDDADTSHLEQLDTLRRVFNKAAEADIPAEVPDYLCCRITLDIFHDPVITPSGLTYERAVILDHLQKVGKFDPVTREPLDPSQLVPNLAIKEAVQAFLDEHGWAYKVD. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10400 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 1 193 IPR045200 GO:0000209|GO:0061630
Seca4g10400 195 CDD RING-Ubox_CHIP 118 188 IPR045202 -
Seca4g10400 195 SUPERFAMILY RING/U-box 112 192 - -
Seca4g10400 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 194 IPR013083 -
Seca4g10400 195 Pfam U-box domain 118 190 IPR003613 GO:0004842|GO:0016567
Seca4g10400 195 ProSiteProfiles U-box domain profile. 117 191 IPR003613 GO:0004842|GO:0016567
Seca4g10400 195 SMART Ubox_2 121 184 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10400 Seca-Chr4 239565209 239566966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10400 1 194 U-box Gene Family AT3G07370 66.495 3.78e-96 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10400 K09561 - gmx:100796519 348.206