Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10399 ATGGCATTGGTGGGAGAAGCATTACTCTCTGCTTCTGTTCAGGTGCTGGTTGACAGGATTGCCTCTACTGATTTGAAGAATTTCTTTTGCAGGAAGGGACATGATCTTTCAATACTGAATAAGCTGAAGATGACACTGCTGACCCTTCGTGCTGTGTTAAATGATGCTGAGGAGAAGCATATCACGAATCCTGCAGTGCATGAGTGGCTTTTTGATCTCAAGGATGCTTTGTTTGATGCTGATAACTTGCTGGATGAAATCAACACAAGGGCTTTAGCACGCAAGATAGAAGCTGAGTCACAAAGTTTTAGTGATAGGGTGTGGGATTTCCTTTCTTCTCCTTTCAAAAGACTTAGAGGGGGGATGAATTATGAACTAGAAGAGTTACTTGAAAAGCTGGAATATTTTGTGAAGCAGAAGGATATCCTTGGGTTGAGAGAAGGTGTTTCTAAGGGTGTTTGGCATGGAACAGCTGCAACATCTGTGGTTGGTCAATCTACTATATATGGTAGAGATGATGACATGGACAAACTTAAACATTATTTACTCTCAGATGATGGGTGTGATGATCATGTGGGAGTGATTACTATTGTTGGCATGGGAGGACTTGGGAAAACAACACTTGCTCAACTCCTTTACAATGATAAAGAAGTAAAAGGGTATTTTAATTTGAGAGCCTGGGCCTATATTACCAAGGAGTTTGATGTTTTCAGGGTGACTAAAACCCTACTTGAGTCTGTTAGTTCAAAGCCTGTTGTCACTAATAATCTTGATGCTCTACAAGTTGAATTGCAGCAAAGCTTAAGTGGTAGGAAATTTTTGTTTGTATTGGATGATTTATGGGATACTTATAATGACTGGAACAGACTGAAAGCCATTCTTAAGTCTGGGGATGTGGGAAGTAGGGTGATTGTCACGACGCGCCAGGAAAATGTTGCCTTGGCTATGAATACCTTTCCTATCTACTATCTGAGGCCCCTGTCACACCAACACTGTTGGGATCTACTTACTGAAAACGCATTTGGAACCAGCCAATCCAATAAAGATCCAAAGCTAGAAGTGATTGGAAGAAAAATTGCAGACAAATGTGGTGGTTTGCCACTAGCTGCAGAAGCTCTTGGGGGTCTTCTTCGAACCAGATTATCTGAAAAAGATTGGAATAAGATTTTAAAAAGCAATATCTGGGATTTGCCTGACAACAAGGTACTTCCACCTTTACTATTGAGCTATCATTATTTGCCTGCTGCTTTGAAAGGCTGTTTTGCCTACTGTTCAATTTTTCCAAAGCATTATACCATAGATAAAGAGACAGTAGTTAGACTATGGATAGCAGAAGGTCTGGTTCAGTCTAAAAGTAATCATAGTTTGGAAGAGACAGGAGATGAATACTTTGATGAACTGATATCTAGGTCATTGATTCAAAGAAACTCTAAATACAAGTTCATAATGCATGATCTCATCAATGATTTAGCTACATCTGTATCAGCTGGGTATTATTTTAGATATGAAGATCCAAAACCAGGTGAATGTCTAGATAGAGTTCGCCATTTGTCTTACAGCAGGGGAGCGTATGACTGTCTCAGTAAATTTGATGTAATTTCAGGAATAAAGGGTTTACGTACCTTCATTGCCTTGTCAATAAGGGTGAACTCATACCAGAATTATTTAGCTGAAAGTGTGCCACATGACTTACTGCCAAAGATGAGGTATCTACGGGTTCTATCTTTGTCACACTATGACAATATCACTAAGTTGCCCGATTCTCTTGGAAATCTCATTCATTTAAGATACTTGGATCTCTCTTACACTAAAATCAAAAGGTTACCTGATGGGACATGTAAGTTGTACAATTTGCAGACCTTGCTGCTGTCACACTGTGAGTCTCTAATTGAATTGCCTCAAGACATAGACAAACTAATTAATCTGCGCCACATTGATCTTAGAGGAACTAAGCTGAAAGAGATGCCTACAAATTTGAGCAGGCTAAAAAATCTCAAAACTCTGACTTCTTTTGTTGTCAGCAAAAGGGAGGATGGATTGAAGGTAAGAGAACTGGGAAACTTTCTACATCTACAAGGGAAAATCTCCATCTTAAACCTACAACATGTTGCTGATGCCAATGAAGCTTTTCAAGCCAATTTGAGGAACAAAGAACAAATTAGGGAGTTAGCACTGGAATGGGGCTGCTACACTAAAACTAAAAACCCACCTATCGAGAGAGAAGTACTTGACCAGCTGCAACCATCAACAAACCTGAAGAAACTCAGCATCAAATATTATGGTGGCACCAGCTTTCCAAATTGGTTGGGGTATTCTTCTTTCTGCAATATGGTATACCTTTGGATAAGTGATTGCAATCATTGTTTGTCACTGCCACCACTCGGGCAATTACCTGCTCTGAAGCAACTCAGTGTTGCTAGGCTCAAATCGCTGAAGTATATTGGATTTGAGTTCTATGGTAAAGGTTCCTCTTCATTTCAGCCATTTCCATCCCTGGGGTATCTAAGCTTTATAGGACTGTCACACTGGGAGGAGTGGCATTCCCTTGGAGATATAGCTACTGAATTTCCTTCCCTTCAATATCTTGGCATATGCGATTGTCCCATGCTAAGAGGAAACTTACCCAACAATCTTCCTTCATTGTATACACTCACGATAGATGGATGTGATGTACTCGAGTTACAAAACTCATATTCACTGAAAAGGTCATCAGATCTCAAGTGGATCTCTTCTCTTCAATCTTTACATGTTATTCACTCCCCAGGTGTATTGTCATTACTAGAAACAGGGAAATTACCCTTGCTTGACTACTTTTATGTTGGATACTACGATTCTCTACAGTTATTCCCTGTGATGACAATCAGTAGCAATTGCCTTCGGACTCTGTACATCAGTAGCATTCCATCTCTCACATCCTTTCAACAAGGTCTTCCCACATCGTTGATGAACCTTCGCATCCAGAATTGTGAGAAATTAGAGTTTCTTCCCATTAAAGCAATGCACAATTATTCATTGCTCGTGCATCTGACATTAAGTGAAAGCTGTCATTCACTGGAATCCTTTCCTTTGGGAAGTTTCCCTGTTTTGGAGCGTCTGCATATCGAGAAATGCCCAAATCTCTTATCCTTCTTCATCTCAGATGATTCAGCTCAGAGCCTCTCACATCTCAAAGCCTTCCATATAACAAATTGTCCCAACTTGCAGTCCTTTCCACAAGGTGGGTTGCACACTCCCAACCTGGAGAAATTTTATGTTAAAAAATGTGGGGAACTCATGTCTCTGCCAGAATGTCTTAACACCCTCACTGGCCTACAAGAATTGAGTCTTCATGAGCTTCCATTGCTTGAGTCATTTGCAGAAGAGGGATTGCCTTTCAATTTGCGAAAACTTGAGGTTGTGGATTGTGGGAAACTCTCAACAACATCCATCATTCAGTGGCATTCTCAATGGCTCTCTTCTCTCACAGAACTAACCATTGGAGGTGATGATCTTGTTGATGCCTTGATGAAGAAGCTACTACTTCCCACTTCTCTTGTGTCCCTATGCATTCGAGATGTTTCTTTCTTGGAAGGGAAGGGGATTCAGCATCTCACTTCTCTGGAAAATCTGAAAATTATGAAATGTCCGAACCTTGAGTTGTTGCCAGAGAAGGAGTTGCTTCCAAGTTCTATTTCAGTACTCAGTATCATAGACTGTCCTTTATTGCAAGAAACCTATCGAAGCAATGGAGGGATAAATTGGCCTGAGGTTGCGCATATTCCATGCATAAAGATCAATAAAGAAGTAATAATATGA 3795 0.4032 MALVGEALLSASVQVLVDRIASTDLKNFFCRKGHDLSILNKLKMTLLTLRAVLNDAEEKHITNPAVHEWLFDLKDALFDADNLLDEINTRALARKIEAESQSFSDRVWDFLSSPFKRLRGGMNYELEELLEKLEYFVKQKDILGLREGVSKGVWHGTAATSVVGQSTIYGRDDDMDKLKHYLLSDDGCDDHVGVITIVGMGGLGKTTLAQLLYNDKEVKGYFNLRAWAYITKEFDVFRVTKTLLESVSSKPVVTNNLDALQVELQQSLSGRKFLFVLDDLWDTYNDWNRLKAILKSGDVGSRVIVTTRQENVALAMNTFPIYYLRPLSHQHCWDLLTENAFGTSQSNKDPKLEVIGRKIADKCGGLPLAAEALGGLLRTRLSEKDWNKILKSNIWDLPDNKVLPPLLLSYHYLPAALKGCFAYCSIFPKHYTIDKETVVRLWIAEGLVQSKSNHSLEETGDEYFDELISRSLIQRNSKYKFIMHDLINDLATSVSAGYYFRYEDPKPGECLDRVRHLSYSRGAYDCLSKFDVISGIKGLRTFIALSIRVNSYQNYLAESVPHDLLPKMRYLRVLSLSHYDNITKLPDSLGNLIHLRYLDLSYTKIKRLPDGTCKLYNLQTLLLSHCESLIELPQDIDKLINLRHIDLRGTKLKEMPTNLSRLKNLKTLTSFVVSKREDGLKVRELGNFLHLQGKISILNLQHVADANEAFQANLRNKEQIRELALEWGCYTKTKNPPIEREVLDQLQPSTNLKKLSIKYYGGTSFPNWLGYSSFCNMVYLWISDCNHCLSLPPLGQLPALKQLSVARLKSLKYIGFEFYGKGSSSFQPFPSLGYLSFIGLSHWEEWHSLGDIATEFPSLQYLGICDCPMLRGNLPNNLPSLYTLTIDGCDVLELQNSYSLKRSSDLKWISSLQSLHVIHSPGVLSLLETGKLPLLDYFYVGYYDSLQLFPVMTISSNCLRTLYISSIPSLTSFQQGLPTSLMNLRIQNCEKLEFLPIKAMHNYSLLVHLTLSESCHSLESFPLGSFPVLERLHIEKCPNLLSFFISDDSAQSLSHLKAFHITNCPNLQSFPQGGLHTPNLEKFYVKKCGELMSLPECLNTLTGLQELSLHELPLLESFAEEGLPFNLRKLEVVDCGKLSTTSIIQWHSQWLSSLTELTIGGDDLVDALMKKLLLPTSLVSLCIRDVSFLEGKGIQHLTSLENLKIMKCPNLELLPEKELLPSSISVLSIIDCPLLQETYRSNGGINWPEVAHIPCIKINKEVII. 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10399 1264 Gene3D - 326 409 IPR042197 -
Seca4g10399 1264 Pfam Leucine rich repeat 570 626 IPR001611 GO:0005515
Seca4g10399 1264 Gene3D Ribonuclease Inhibitor 539 926 IPR032675 -
Seca4g10399 1264 Pfam NB-ARC domain 172 391 IPR002182 GO:0043531
Seca4g10399 1264 PANTHER DISEASE RESISTANCE PROTEIN RP 39 874 IPR044974 GO:0006952
Seca4g10399 1264 Pfam Rx N-terminal domain 9 103 IPR041118 -
Seca4g10399 1264 FunFam Probable disease resistance protein At1g61300 155 319 - -
Seca4g10399 1264 FunFam Probable disease resistance protein At1g63360 410 493 - -
Seca4g10399 1264 Gene3D Ribonuclease Inhibitor 945 1247 IPR032675 -
Seca4g10399 1264 SUPERFAMILY L domain-like 955 1248 - -
Seca4g10399 1264 Gene3D - 154 319 IPR027417 -
Seca4g10399 1264 Coils Coil 39 59 - -
Seca4g10399 1264 SMART LRR_typ_2 592 615 IPR003591 -
Seca4g10399 1264 SMART LRR_typ_2 639 662 IPR003591 -
Seca4g10399 1264 SUPERFAMILY L domain-like 483 946 - -
Seca4g10399 1264 Gene3D - 13 120 - -
Seca4g10399 1264 PRINTS Disease resistance protein signature 194 209 - -
Seca4g10399 1264 PRINTS Disease resistance protein signature 267 281 - -
Seca4g10399 1264 PRINTS Disease resistance protein signature 613 629 - -
Seca4g10399 1264 PRINTS Disease resistance protein signature 363 377 - -
Seca4g10399 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Seca4g10399 1264 Gene3D - 410 493 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10399 Seca-Chr4 239554653 239560054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10399 582 676 WRKY Transcription Factor Family AT4G12020 40.625 1.23e-08 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10399 - - aprc:113850186 1748.41