LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g10398	ATGAACGACAGTGACAACAGCCAAAACGGCACCTTACAAACACTGGATTTTGAAAACCTGAAAGTTATCTCCGCCGTGGGACGCGGCGCTAAGGGTGTCGTCTTCCTCGCAAGAACCGGTGATCGGTCTTCAAACGAGTGTTTGGCTCTGAAAGTGATCTCAAAAGCTCTGATACATCAAAAGAAGGCAAAGAATAAAAACAAGAAAAACGACAACGACGGTCCCGGCGAGTACAAGAGGGTGTCGTTTGAACAAGAAGTGCTAGGTCGTTTTGATCATCCCCTTTTGCCGCGGTTGCGAGGGGTTTTGGAAACTGAAAATGTTGTCGGCTTCGCCATTGATTATTGCCACGGTGGCAACCTCCATTCTCTTAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGATACCATCAGGTTTTACGCGGCGGAATTGGTTCTCGCATTGGAATATTTGCACGAATTGGGAATAGTGTACAGGGATTTGAAGCCAGAGAACGTGATGATCCAAGAAAACGGTCACATAATGCTCATCGATTTCGATCTCTCCACGAAGCTAAACCCTAAATCCCCTCAATCACTGAGTCGTGACTCGTCAGTGAGTTCTAACTCGGCGACGGAGAATCACACGGCGAAGCGACGGCTCTCGCGATTCTACACATACTGTAACTCGGGCATCTTGCCGTGTGACTCGGACTCGGAGCCCCAACCTGCCGTCAGCTCAGCGCGGTGGAGCGAGTCAGACTCAGTCGAGAAATCGAACTCGTTCGTCGGAACGGAGGAGTACGTGGCGCCTGAAATTGTATGCGGAAAGGGTCACAGTTTCAGCGTTGATTGGTGGTCACTCGGCGTTGTTTTGTACGAAATGCTATACGGAACGACGCCGTTTAAGGGGACAAATAGAAAAGAAACGTTTTACCGGATTTTGACCAAGGAGCCGGAGTTGACGGGGGAAAAGACGGCGTTGAGGGATTTGATTGGGAGATTGCTGGAAAAGGACCCTGACCGTCGGATCCTGGTCGATGAAATCAAGGGCCACGATTTCTTCAAAGGGGTTAAGTGGGATACGGTGTTGCAAATAGCAAGGCCACCTTATATTCCTCAAATTGAGGTTGAGAATGAGAAGACAAGGGGATTTAGAAAAAACGAAGTGGAGTTGTTTGTCCATGAGGTTTTTTTTCCCAAGTGTGATGATGATGAAGAGAAAAATAAGAAAGTGGAGGTAATGAAGGGTGACAGTGAGAATAATAAGATGGTGTGGGTAGACAAGTTGAGTAACAGTCTTACTGAGAATGAGGATTTTTTAATTTTTTGA	1314	0.4711	MNDSDNSQNGTLQTLDFENLKVISAVGRGAKGVVFLARTGDRSSNECLALKVISKALIHQKKAKNKNKKNDNDGPGEYKRVSFEQEVLGRFDHPLLPRLRGVLETENVVGFAIDYCHGGNLHSLRKKQTEKMFSDDTIRFYAAELVLALEYLHELGIVYRDLKPENVMIQENGHIMLIDFDLSTKLNPKSPQSLSRDSSVSSNSATENHTAKRRLSRFYTYCNSGILPCDSDSEPQPAVSSARWSESDSVEKSNSFVGTEEYVAPEIVCGKGHSFSVDWWSLGVVLYEMLYGTTPFKGTNRKETFYRILTKEPELTGEKTALRDLIGRLLEKDPDRRILVDEIKGHDFFKGVKWDTVLQIARPPYIPQIEVENEKTRGFRKNEVELFVHEVFFPKCDDDEEKNKKVEVMKGDSENNKMVWVDKLSNSLTENEDFLIF.	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g10398	437	FunFam	Serine/threonine-protein kinase OXI1	120	188	-	-
	Seca4g10398	437	FunFam	Serine/threonine-protein kinase OXI1	251	368	-	-
	Seca4g10398	437	PANTHER	FLIPPASE KINASE 1-RELATED	13	375	-	-
	Seca4g10398	437	SUPERFAMILY	Protein kinase-like (PK-like)	18	382	IPR011009	-
	Seca4g10398	437	Pfam	Protein kinase domain	22	213	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10398	437	Pfam	Protein kinase domain	251	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10398	437	SMART	serkin_6	20	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10398	437	ProSiteProfiles	AGC-kinase C-terminal domain profile.	350	437	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Seca4g10398	437	Gene3D	Transferase(Phosphotransferase) domain 1	120	189	-	-
	Seca4g10398	437	Gene3D	Transferase(Phosphotransferase) domain 1	249	368	-	-
	Seca4g10398	437	ProSiteProfiles	Protein kinase domain profile.	20	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g10398	437	MobiDBLite	consensus disorder prediction	189	208	-	-
	Seca4g10398	437	Gene3D	Phosphorylase Kinase; domain 1	20	119	-	-
	Seca4g10398	437	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g10398	Seca-Chr4	239535744	239537610	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g10398	13	437	AGC Kinase Gene Family	AT3G25250	57.834	3.19e-158	452

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Seca4g10398		Pkinase	4.4e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g10398	K20714		-	gmx:100785773	602.823