Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10389 ATGCCTGAACAAATTCCATATGGTGTTGCTGCAAGCATCATTGAGAGGTTGGCTTCAGCAGCCTTTCGTGAATTTGGACGGATTTATCATGTCATGGATGAGTTGGAAATGCTTAAGAGTACAATGGAATCCATCAAAGCTGTGCTTCTTGATGCTGAAGAGAGACAAGAACAAGATCTTGCTGTGCAAATCTGGATAAGAAGGCTCAAAGAAGTACTGCATCCTGCAGATGATTTGCTAGATGAATTTGTCATTCAAGATATGAGACACAAAGCTGATTCAGGTCCTAAGCAAGTATTTCATTTCTCATCTCCAAACCAAATTGCTTTTCACCGTAAAACGGCTCGTAAAATTGAAAAAATACGAAAAAAATTTAATGATGTAGTGCAAGAAATGTCTCAGTTGAATTTAAGCCCAAGAGCTGTGGTGGTTAAACAAATTGGTAGTGTAAGGAGGGAAACTAGTTCTTTTGTGTTAGAATCAGATATCATCGGAAGAGAGGATAATAAAATGGAGATTATAAATTTGTTGAGGCAATCACATAAAAGTCAGAATGTTTCCTTAGTTGCTATTGTTGGTATTGGTGGTTTAGGCAAGACAGCTCTTGCTCAATTGGTATATAATGATGTGGAAGTGCAAAATTTGTTTGAAAAGCGAATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAGTTATTCTAAAGAACATGTTGGAGTCATTAGCCAATAAAAAAATTGATGATAAGTTATCACTAGACACCTTGCAAAACAAGCTTCGTGAAAATTTAACTGGTAAAAGATACTTGTTAGTTCTAGATGACATTTGGAATGAAAGTCTTGAAAAATGGGATCAGTTGAGAACTTACCTGATGTGTGGTGCTCAAGGTAGTAAGGTTTTAGTGACAACCCGTAGTAAAAATGTGGCACGGACAATGGGTGTAAGCAACCCCTTTGTTTTGAATGGTTTGACTTCAAAAGAATCTTGGAGCTTGTTAAAGAAAATTACATTTGGGGATGCTACTAGGAGAGTGAATCAAACTCTAGAATCAACCGGTAAGAAGATAGCAAAAAAGTGTAGAGGTGTTCCACTAGCAATTAGAACACTAGGAGGCCTATTGCAGAGCAAAAGTGAAGAAATTGAATGGATTGGTGTTTTACAAGGTGACTTTTGGAAATCAAGTGAAGACGAAGACAGTATCATGCCAGTTCTAAAACGAAGTTACCAGAACTTGTCGTCTCAACAAAGACAATGTTTTGCATATTGCTCTTTATATCCTAAGGATTGGAAAATTGAAAAGGATGAGTTGATTCAACTATGGATGGCACAAGGTTATCTTGATTGTTCAACTGAAAAGCAGACTATGGAAGATGTTGGTAACCAATTTGTAAAGACTTTCTTAATGAAGTCTTTTTTTCAAGATGCGGAAATGACCGAACATGGTGATATAGTTAGTTTCAAGATGCATGATTTAATGCATGATCTTGCGATGCTAGTGGCTGGCAATGATTGTTGTTACTTGGATAATATTAGTGAGGCAAATAAACTTGAAGGAAGACCCATGCATGTTTGGTTGAAATCTAGTGCCATTGGTTTGTTGCGCTCATTGGATGCAAGCAAGCTGCGAACTTTGATTTTGACGCATTACAACGGGGGAGAAAATTCTGTTATTACAAAGTTCAAATACTTGCGTGTTTTGAAGTTGTCATCTTCTGCTTTAATCAAGTTTCCTGGTTCAATTGGAAGATTGACGCATTTAAGATATCTTCACTTATTGCGGTGCAATTGTTTGACACGTCTTCCCAAATCCATAAGCAATCTTGTTTGCTTACAAACATTTAAATTGGAGGTGTGTTATTATCTTCAATTTTCCACAAAAGTTGTCTCAAAATTAATCAATTTGAGACACCTTGAAATCAATCATTGGAAAACCTCCGGAGACAAGATGACAATTGGAATGGGAAAATTGAGCGTGCGGTGCTATGAGGGTGTGATTCATTTAAACTTCCTTTCTTCTTTCACAAATATTGTTGAAATCTCTCTTGGTCAGTGTTCAAGTTGTCGGTATCTCCCACCATTGGAAAGTCTCCCATTCCTTAAGTCACTAAAGATAAGTTCATTTAAAGAACTAGAATACATATATCTTGAAGAGAATTTTCTTGTAACATTCTTCCCATCTTTGGAGACACTCAGTTTTCAATATTGTAGAAAGCTCAGGGGATGGTGCAGGATGGGAGATGATTTCAATGATGCTAATAGTTCTTCACATCATCTCTTGTTGCCTTCGTTTCCTCGTCTTTCTCAATTATTAATCCATAATTGTCCGAGGTTGACTTGCATGCCTACTTTTCCAAGCTTGGATAAGAGATTGGAATTGTGTGATTGTAATGTGGAGCCATTGGAAGCAACTCTAAAGACAGTGGTATCAAAATGTTCAGTTGACTTCACTCCTCTTTCCATGCTCAAATCTTTGCGCATTGGTGGAAGTTTGGACGTGAAAAAATTCCCTGAGAATTGGATGCAAAATCTTACTTCTCTTGAGCATCTTGTATTCCTATACTTTTCAAGTCAAACATTTCATGACATTGAGTTTTGGTTTAAGGATGACTTCAAATCTCTTCCTTCTCTGCAAAAAATCACTGTGCAATTTTGTATAGACCTAAAGGCCTTGCCAGATTGGATATGCAACTTCTCATCGCTTCAGCATGTCACAATGTCATATTGCAAAGATTTGGCATCGCTGCCTGAAGAAATGCCTCGTCTTACCAAGTTACAGACCCTAAAAATCATTGGATGTCCCCTCCTAATTAGAGAATGCCAAATAGAAGCAAGTGCAGCTAGGCCCAAAATTGCTCACATCCCGAACATAATCTTAAAGCACTCTCCGTTTCGAAGGTACCAATTTTCTAGATTTTAA 2916 0.3735 MPEQIPYGVAASIIERLASAAFREFGRIYHVMDELEMLKSTMESIKAVLLDAEERQEQDLAVQIWIRRLKEVLHPADDLLDEFVIQDMRHKADSGPKQVFHFSSPNQIAFHRKTARKIEKIRKKFNDVVQEMSQLNLSPRAVVVKQIGSVRRETSSFVLESDIIGREDNKMEIINLLRQSHKSQNVSLVAIVGIGGLGKTALAQLVYNDVEVQNLFEKRMWVCVSDNFDVKVILKNMLESLANKKIDDKLSLDTLQNKLRENLTGKRYLLVLDDIWNESLEKWDQLRTYLMCGAQGSKVLVTTRSKNVARTMGVSNPFVLNGLTSKESWSLLKKITFGDATRRVNQTLESTGKKIAKKCRGVPLAIRTLGGLLQSKSEEIEWIGVLQGDFWKSSEDEDSIMPVLKRSYQNLSSQQRQCFAYCSLYPKDWKIEKDELIQLWMAQGYLDCSTEKQTMEDVGNQFVKTFLMKSFFQDAEMTEHGDIVSFKMHDLMHDLAMLVAGNDCCYLDNISEANKLEGRPMHVWLKSSAIGLLRSLDASKLRTLILTHYNGGENSVITKFKYLRVLKLSSSALIKFPGSIGRLTHLRYLHLLRCNCLTRLPKSISNLVCLQTFKLEVCYYLQFSTKVVSKLINLRHLEINHWKTSGDKMTIGMGKLSVRCYEGVIHLNFLSSFTNIVEISLGQCSSCRYLPPLESLPFLKSLKISSFKELEYIYLEENFLVTFFPSLETLSFQYCRKLRGWCRMGDDFNDANSSSHHLLLPSFPRLSQLLIHNCPRLTCMPTFPSLDKRLELCDCNVEPLEATLKTVVSKCSVDFTPLSMLKSLRIGGSLDVKKFPENWMQNLTSLEHLVFLYFSSQTFHDIEFWFKDDFKSLPSLQKITVQFCIDLKALPDWICNFSSLQHVTMSYCKDLASLPEEMPRLTKLQTLKIIGCPLLIRECQIEASAARPKIAHIPNIILKHSPFRRYQFSRF. 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10389 971 Pfam NB-ARC domain 167 410 IPR002182 GO:0043531
Seca4g10389 971 CDD RX-CC_like 7 124 IPR038005 -
Seca4g10389 971 FunFam Probable disease resistance protein At1g61300 145 317 - -
Seca4g10389 971 PRINTS Disease resistance protein signature 188 203 - -
Seca4g10389 971 PRINTS Disease resistance protein signature 262 276 - -
Seca4g10389 971 PRINTS Disease resistance protein signature 895 911 - -
Seca4g10389 971 PRINTS Disease resistance protein signature 359 373 - -
Seca4g10389 971 PANTHER DISEASE RESISTANCE PROTEIN RP 35 786 IPR044974 GO:0006952
Seca4g10389 971 Gene3D - 148 316 IPR027417 -
Seca4g10389 971 Gene3D Ribonuclease Inhibitor 532 786 IPR032675 -
Seca4g10389 971 Gene3D Ribonuclease Inhibitor 787 945 IPR032675 -
Seca4g10389 971 Gene3D - 408 497 IPR036388 -
Seca4g10389 971 SUPERFAMILY L domain-like 540 935 - -
Seca4g10389 971 Gene3D - 322 407 IPR042197 -
Seca4g10389 971 Gene3D - 10 134 - -
Seca4g10389 971 Pfam Rx N-terminal domain 11 103 IPR041118 -
Seca4g10389 971 SUPERFAMILY L domain-like 473 800 - -
Seca4g10389 971 Coils Coil 35 55 - -
Seca4g10389 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 422 IPR027417 -
Seca4g10389 971 FunFam Probable disease resistance protein At1g63360 408 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10389 Seca-Chr4 239439756 239443655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10389 185 446 WRKY Transcription Factor Family AT5G45050 24.727 8.68e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10389 - - tpra:123883200 1158.67