Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10367 ATGGACCAAGTTTATTCTAGTATGGCTTCATTTTTTCTTCACTTTCTCCTTTGCTCACTGATTCTGCTACCCTTCCGTGTTCAATCCCAAACAAGAAGCAACATAGCTGTTGGTGGTTCTTTTAATGCAAAAACCAGCTCATCCCCATGGTTGGTTTCACCTTCTGGTGACTTTGCCTTTGGGTTCCTGCCCCTTTTGGGCACTGATCTTTTCTTGCTTTCCATTTGGTATGCCAAGATTCCAGACAAGACCATAGTCTGGTATGCCAATGGAGACAATCCTGCTCCAAAGGACTCAAAAGTGGAGCTCACTGTTGATGGACTAGTGCTCACTTCTCCCAATGGTGAGCAGTTATGGAAAACTGAGGGTCTCAGTGTTAGAGTTTCTCATGGTGTGTTCAATGACACTGGCAACTTTGTTCTTGAGGATGGTAACTCCAACACTGTCTGGGAGACTTTCAAGAATCCTAAGGACACCTTGTTGCCCTCTCAGGTTCTTGGAAAAGGTGGAAAGCTTTCTTCAAGACTTAAGGAGACAAATTTCAGCAAAGGAAGGTTTGAGCTTCTTTTACAAAATGATGGTAATCTTGTTATGCATTCTATCAATTTACCATCTGAGTATGTCAATGAAAACTACTATAAAAGTGGAACCACTAGATCCAATACATCAAGTCCTGGGACTCAATTGGTCTTTGATAGATCAGGGGACTTGTATGTTTTGAGAGAGAACAATGAAAAGTTCAATGTGTCAGAAGGGGGTAGAGTTTCTACCAATCAATTTTACCTTCGAGCAAGTCTTAATTTTGATGGGGTGTTCACACTCTATCAGCATCCAAAGAATTCTTCAACTGAGAATGGAGGTTGGAGTCCAGTGTGGTCTCAACCAGATAATATATGTACTGACCTCCTTGTTAATGCAGGTAGTGGTGTTTGTGGATATAACAGCTTCTGCACCTTAGGAGATAATCAGAGGCCAATATGTCAGTGTCCAAAAAGATATTCACTGGTTGATCCTACTGATCCTTATGGTAGCTGCAAACCAGATTTCCCACTGGGATGTGCAGAAGATGAACTTAGTAACAAGAAAGATCTCTATGATTTTGAGGTTTTGATAAATACTGATTGGCCTCTTTCAGATTCTGTGCTTTTAAAGCCTTTTACTGAAGAACAATGCAGGCAGTCATGTATGGAAGATTGCATGTGTTCTGTTGCCATTTTCAGGTTAGGTGATAGCTGTTGGAAGAAGAAGTTGCCACTTTCAAATGGGAAAGTTGATGCCTCACTTGATGGTGCTAAGGCCTTCTTGAAAGTGAGGAAAGATAATTCCTCATTGGTTTTTCCTCCAGGTCCAATCATTGTGAAAAAGAATAGGAACACTATGGTTTTGGTTGGCTCAGTGCTTTTGAGTAGTTCTGCTGTTCTCAATATTGTGTTGATGGGAGCACTCTGCTTCAGCACTTCCCTCATTTTTCACAAGAAGAAGGTTAGAAGACTTGGCCAAAGTGACACCACTACTGTTGAAACCAATTTGCGTTGCTTCACTTATGAGGAGCTTGAAGAAGCTACCAATGGGTTCAACAAAGAGCTAGGAAGGGGAGCTTTTGGTGTTGTTTATGAAGGAGTCCTTAACATATGTTCCACAACTCATGTGGCAGTGAAAAAGTTGAACAATTTTCTCTTGGAAGAGGTTCACAAGGAATTCAAGAATGAATTGAGAATCATTGGTCTCACACATCACAAGAACTTGGTTCGTTTACTTGGATATTGTGAGGCTGGATCTGAACGGTTGCTAGTTTATGAGTACATGAGCAATGGTACTTTAGCAAGTTTTCTCTTCAATGGGGAGAAACCCAGTTGGAAATCAAGGCTACAAATTGCAATTGGGATTGCTAGAGGACTTGTGTATTTACATGAAGAGTGTAGCACCCGGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATCACTTTAATGCAAAGATTTCTGACTTTGGATTGGCCAAGCTCTTGAACATGAATCAGAGCAGAACCAATACTGGCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCTATCACAGCTCAAGTGGATGTCTTTAGTTATGGGGTACTGCTACTTGAGATAATTTCCTGCAGAAAAAATGTTGAAATGGAGCCAGAAGATGAAGAGAAAGCAATCCTAACTGATTGGGCTTATGACTGCTACAAAGAAGGTGTTGTGGATGCCTTGGTTGAGGGTGATCGGGAGGCATTGGAGGACAAGAAGAACTTGGAGAAGTTGGTAAAGATTGCCATTTGGTGTATTCAAGAGGATCCAGGTCTTAGACCTGCCATGAGGAAAGTGATGCAGATGCTTGAAGGTATTGTTGAAGTGCAAGTTCCACCATGCCCCTCACCAATTAGTATTCAATATTCTCTGGATTAG 2451 0.4137 MDQVYSSMASFFLHFLLCSLILLPFRVQSQTRSNIAVGGSFNAKTSSSPWLVSPSGDFAFGFLPLLGTDLFLLSIWYAKIPDKTIVWYANGDNPAPKDSKVELTVDGLVLTSPNGEQLWKTEGLSVRVSHGVFNDTGNFVLEDGNSNTVWETFKNPKDTLLPSQVLGKGGKLSSRLKETNFSKGRFELLLQNDGNLVMHSINLPSEYVNENYYKSGTTRSNTSSPGTQLVFDRSGDLYVLRENNEKFNVSEGGRVSTNQFYLRASLNFDGVFTLYQHPKNSSTENGGWSPVWSQPDNICTDLLVNAGSGVCGYNSFCTLGDNQRPICQCPKRYSLVDPTDPYGSCKPDFPLGCAEDELSNKKDLYDFEVLINTDWPLSDSVLLKPFTEEQCRQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGKVDASLDGAKAFLKVRKDNSSLVFPPGPIIVKKNRNTMVLVGSVLLSSSAVLNIVLMGALCFSTSLIFHKKKVRRLGQSDTTTVETNLRCFTYEELEEATNGFNKELGRGAFGVVYEGVLNICSTTHVAVKKLNNFLLEEVHKEFKNELRIIGLTHHKNLVRLLGYCEAGSERLLVYEYMSNGTLASFLFNGEKPSWKSRLQIAIGIARGLVYLHEECSTRIIHCDIKPQNILLDDHFNAKISDFGLAKLLNMNQSRTNTGIRGTKGYVALEWFKNMPITAQVDVFSYGVLLLEIISCRKNVEMEPEDEEKAILTDWAYDCYKEGVVDALVEGDREALEDKKNLEKLVKIAIWCIQEDPGLRPAMRKVMQMLEGIVEVQVPPCPSPISIQYSLD. 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10367 816 SMART serkin_6 523 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10367 816 FunFam S-receptor-like serine/threonine-protein kinase 492 601 - -
Seca4g10367 816 PIRSF SRK 4 815 IPR024171 GO:0004674
Seca4g10367 816 ProSitePatterns Protein kinases ATP-binding region signature. 529 554 IPR017441 GO:0005524
Seca4g10367 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 217 IPR036426 -
Seca4g10367 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 802 - -
Seca4g10367 816 ProSiteProfiles Bulb-type lectin domain profile. 36 154 IPR001480 -
Seca4g10367 816 Pfam Protein tyrosine and serine/threonine kinase 525 794 IPR001245 GO:0004672|GO:0006468
Seca4g10367 816 SMART blect_4 42 156 IPR001480 -
Seca4g10367 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 807 - -
Seca4g10367 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Seca4g10367 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 29 154 - -
Seca4g10367 816 Gene3D - 32 154 IPR036426 -
Seca4g10367 816 CDD STKc_IRAK 529 797 - -
Seca4g10367 816 CDD B_lectin 51 156 IPR001480 -
Seca4g10367 816 Gene3D - 155 285 IPR036426 -
Seca4g10367 816 Gene3D Transferase(Phosphotransferase) domain 1 602 801 - -
Seca4g10367 816 SUPERFAMILY Protein kinase-like (PK-like) 501 795 IPR011009 -
Seca4g10367 816 Pfam D-mannose binding lectin 84 168 IPR001480 -
Seca4g10367 816 FunFam Uncharacterized protein 156 285 - -
Seca4g10367 816 Gene3D Phosphorylase Kinase; domain 1 496 601 - -
Seca4g10367 816 ProSiteProfiles Protein kinase domain profile. 523 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10367 Seca-Chr4 239200688 239203138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10367 500 796 Receptor kinase-like Gene Family AT1G60800 42.574 1.28e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g10367 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10367 - - gmx:100815462 1186.02