Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10366 ATGGCTTTGGTTTCATCATCAACAACTAAACAAATTGGTGGTCGAAGGTTGCTTCTTTCATATAGCTTCCCCGATTGGCTATCTTCTTCAGATAGAAAGCTTCTTCAGACAGAACCAAAAGCTGATATCGTGGTGGCTCAAGATGGCACTGGGAATTATAAAACCATATCAGAAGGTGTGACTGCAGCTGCTAAGCTTAATGGAAAAGCGAGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGATGTCAATGAAAAACTTGATGATCATTGGAGATGGGTGGGTTCCACTATTGTTACTGATAATAATAACGCAAAAGATGGCTCCACTACGTTTCGTTCAGCCGCTTTCGGGAATGAAGAATAAATATATGCTACGGGAATGA 405 0.4 MALVSSSTTKQIGGRRLLLSYSFPDWLSSSDRKLLQTEPKADIVVAQDGTGNYKTISEGVTAAAKLNGKARVVIHVKAGVYKESVDIKMSMKNLMIIGDGWVPLLLLIIITQKMAPLRFVQPLSGMKNKYMLRE. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10366 134 Gene3D - 7 113 IPR012334 -
Seca4g10366 134 SUPERFAMILY Pectin lyase-like 38 100 IPR011050 -
Seca4g10366 134 PANTHER PECTINESTERASE 19 100 - -
Seca4g10366 134 Pfam Pectinesterase 42 100 IPR000070 GO:0030599|GO:0042545
Seca4g10366 134 ProSitePatterns Pectinesterase signature 1. 68 87 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10366 Seca-Chr4 239199222 239199626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10366 15 100 Carbohydrate Esterase AT1G23200 57.609 2.53e-25 97.8