Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10335 ATGAGTGGGGTGGTTGGAACACCGTATTACGTGGCGCCAGAGGTTCTAATGAGAAGGGATTATAACGAGAAGGTTGATGTTTGGAGTTGTGGTGTGATAATATTTGATGGGATTCCACCTATGGAGACTCTGTTTGGAGACTCTGTGATTGAGATCTTTAAAGCTGTTGTTAGGGCTAATCTAAGGTTTCCTTTTAGAATCTCCCGATCTGTTTCCCCTGCTGCTAAGGATCTCTTGCACAAGATGATCTGCAGGGACGCTTCCATGAGAATATCTGCAGAGCAAGCCTTAAGACACCCTTGGATCTTGAGTGGAGGTGAAATGGCTAATCTGAATTGA 339 0.4454 MSGVVGTPYYVAPEVLMRRDYNEKVDVWSCGVIIFDGIPPMETLFGDSVIEIFKAVVRANLRFPFRISRSVSPAAKDLLHKMICRDASMRISAEQALRHPWILSGGEMANLN. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10335 112 SUPERFAMILY Protein kinase-like (PK-like) 2 104 IPR011009 -
Seca4g10335 112 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10335 112 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 105 - -
Seca4g10335 112 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Seca4g10335 112 Pfam Protein kinase domain 3 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10335 112 SMART serkin_6 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10335 Seca-Chr4 238895640 238896131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10335 4 110 EF-hand Containing Proteins AT3G20410 40.909 4.26e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g10335 Pkinase 2.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10335 - K08794 gmx:548089 167.162