Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10328 ATGATTCGCGAGCGAAAAACCGTTACAACTAAGTTTCTAAAATCCAATTCCATGAAAACCACCTTACCAAGAGTGGTTCGTATCACAGTAACAGATCACTTTGCCACAGACTCTTCCAGTGATGAAGAAGAAGCAGCAGAATATCTCCCTAAGGCAAAGAGAATCGTGAATGAGATCAGAATCAGAGAAACTCTGTCTCACACAATTGGTGGTAACAACAATAAGAGACATGAAGATAATGTTAATCGAAGTTCTCTGAATAATCAGAGACCTAAAAAAGATTCAAATGCTCACAACCACCACAAATATCGCGGCGTTCGTCAACGGCCATGGGGAAGATGGGCGGCGGAGATTAGAGATCCTGTGAGGCGAATGAGAGTGTGGCTTGGGACTTACGATACGGCGGAAGAAGCTGCTATGGTTTATGACAGAGCAGCTATTCATTTTAGAGGCGCTGATGCTGTTACGAATATTATCAAACCGCCTCAGAAAGAGAAATCTATACCGGAATGTGATGAAGCTGAATCGGTTAATTGTGATAAAGAAGAATATGGCGGTGGTGTATCTTCGTCTTCTTCTCCTACCTTTGTTCTTGTTTCTAGGCCTTTGAATGAGTGGATGCATATGGAAGAATGGTTTAGAGAGTTAAGTGGTGAAGAATTGTGCTTGGAGGATTCACTTGGTGGTTCTTGTCCTCTTTATGAACCTCTTCCTTTATTAGTTTCCAATCGTAGTGATATTGATGTTCCTTTTAGTTTTGATAAGGATTTTGAATCGTGTAAATGGGATGTAGATGGTTACTTTAATGATCCTTTGTTACTCTCAACCATGTAA 834 0.4065 MIRERKTVTTKFLKSNSMKTTLPRVVRITVTDHFATDSSSDEEEAAEYLPKAKRIVNEIRIRETLSHTIGGNNNKRHEDNVNRSSLNNQRPKKDSNAHNHHKYRGVRQRPWGRWAAEIRDPVRRMRVWLGTYDTAEEAAMVYDRAAIHFRGADAVTNIIKPPQKEKSIPECDEAESVNCDKEEYGGGVSSSSSPTFVLVSRPLNEWMHMEEWFRELSGEELCLEDSLGGSCPLYEPLPLLVSNRSDIDVPFSFDKDFESCKWDVDGYFNDPLLLSTM. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10328 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 175 - -
Seca4g10328 277 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
Seca4g10328 277 MobiDBLite consensus disorder prediction 66 106 - -
Seca4g10328 277 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 FunFam Ethylene-responsive transcription factor 2 101 160 - -
Seca4g10328 277 CDD AP2 102 157 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Seca4g10328 277 SUPERFAMILY DNA-binding domain 102 158 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10328 Seca-Chr4 238784302 238785135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10328 4 198 AP2-EREBP Transcription Factor Family AT4G27950 45.771 2.91e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g10328 AP2 9.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10328 - - mtr:25500226 216.468