Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10326 ATGGTTCTGAGTAACCGGATTTTCAGTTCTCATATTTTTGTTAATTTCTTGCTGCTGATTAGTTGTGGCATGACCTATGGGACTGAGAGTGATATCTTCTGCTTGAAAAGTATAAAAAGTTCCCTTGAAGACCCCAATAATTATTTGCAGTCTTCTTGGAACTTCAACAATAATACTGAAGGGTTTATCTGCAGATTTAATGGGGTTGAATGTTGGCACCCTGATGAGAACAGAGTGTTGAATCTCAAACTGTCAAATATGGGACTCAAGGGTCAGTTTCCTCGTGCCATTCGAAATTGCTCAAGCTTAACAGGATTAGATCTTTCAATTAACAATCTCTCTGGAAATATTCCTGGAGATATATCTATTCTTCTACAATATGTGACATCCCTTGATCTATCTTCAAATAAATTTACTGGGGAGATACCTACCAGTCTTGCAAATTGTACCTATCTAAATACCCTCAACCTTGATCAGAATCGACTTACTGGTCAAATTCCTCAACAATTTAGCCTTCTCACACGACTCAAGTCATTTACTGTATCCAACAATCTTTTGACAGGACCAGTTCCAAACTTCCCTAGTTCTGTTTTGGTAATTTATGCAAATAATCAAGGCCTGTGTGGAGAACGTTCATTGGGTCCTTGCCCGGGCAAGGCTTCTAAGAGTAGTAACACTGCAGTTATAGCTGGGGCAGCTGTTGGCGGGGTAACTGTTGCAGCACTAGGAGTGGGTATTGGAATGTTCTTCTATGTGCGTCGTATTTCTTACAGGAAGAAGGAAGAAGACCCAGAAGGGAACAAATGGGCAAGAAGTATAAAAGGAACTAAAGCAATTAAGGTTTCTATGTTTGAGAAATCAATTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATTGGGTCAGGAAGAACAGGAACTGTATACAAAGCTGCTCTTGATGATGGCACAACACTTATGGTTAAGAGATTGCAGGAATCTCAACACACTGAGAAAGAATTCATGTCTGAGATGAGAACACTAGGGTCTGTCAAACACCGTAACCTGGTTCCTCTATTAGGTTTTTGCATGGCCAAAAAGGAGAGGCTTGTGGTCTATAAAAACATGCCAAATGGCAACCTGCATGATCAACTACATCCTGCTACTGGCGGGTGTGCCCTTGAGTGGCCTTTGAGACTCAAAATTGCAATTGGAGCGGCCAAAGGATTAGCATGGCTTCATCATAGCTGCAATCCCCGCATTATCCATCGAAACATAAGCTCTAAATGCATCTTATTGGATGCAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCCAGATTGATGAACCCAATAGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTACACAAAAACATTGGTTGCTACACCTAAGGGGGATGTTTATAGCTTTGGGACAGTGCTTCTTGAGTTGGTGACTGGCGAAAGACCTACAAATGTGGCGAAAGCTCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATTACGGAGCTCTCAAGCAACTCACACCTCCAGGATGCCATTGATGAATCACTAGTTGGCAAGGGTGTTGATAATGAGCTTTTCCAATTTTTAAAGGTTGCATGCAACTGTGTTGTGCCAACTGCAAAGGAGAGACCAACCATGTTTGAGGTATATCAGCTTTTAAGAGCTATTGGGGGTAGGTACAATTTCACAACTGAGGATGAGATATTGGTACCTGAAGATATTGGCAGTACTGATAACATGGCGGAACTTATTGTAGCTCGAGAAGGAAATGATTGA 1848 0.4085 MVLSNRIFSSHIFVNFLLLISCGMTYGTESDIFCLKSIKSSLEDPNNYLQSSWNFNNNTEGFICRFNGVECWHPDENRVLNLKLSNMGLKGQFPRAIRNCSSLTGLDLSINNLSGNIPGDISILLQYVTSLDLSSNKFTGEIPTSLANCTYLNTLNLDQNRLTGQIPQQFSLLTRLKSFTVSNNLLTGPVPNFPSSVLVIYANNQGLCGERSLGPCPGKASKSSNTAVIAGAAVGGVTVAALGVGIGMFFYVRRISYRKKEEDPEGNKWARSIKGTKAIKVSMFEKSISKMKLSDLMKATNNFSNTNIIGSGRTGTVYKAALDDGTTLMVKRLQESQHTEKEFMSEMRTLGSVKHRNLVPLLGFCMAKKERLVVYKNMPNGNLHDQLHPATGGCALEWPLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWITELSSNSHLQDAIDESLVGKGVDNELFQFLKVACNCVVPTAKERPTMFEVYQLLRAIGGRYNFTTEDEILVPEDIGSTDNMAELIVAREGND. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10326 615 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Seca4g10326 615 Pfam Protein tyrosine and serine/threonine kinase 306 574 IPR001245 GO:0004672|GO:0006468
Seca4g10326 615 FunFam Leucine-rich repeat receptor-like protein kinase 28 192 - -
Seca4g10326 615 Gene3D Phosphorylase Kinase; domain 1 264 376 - -
Seca4g10326 615 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 377 - -
Seca4g10326 615 Pfam Leucine rich repeat 128 186 IPR001611 GO:0005515
Seca4g10326 615 CDD STKc_IRAK 309 577 - -
Seca4g10326 615 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 378 590 - -
Seca4g10326 615 SUPERFAMILY L domain-like 28 197 - -
Seca4g10326 615 Gene3D Transferase(Phosphotransferase) domain 1 378 593 - -
Seca4g10326 615 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Seca4g10326 615 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Seca4g10326 615 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 193 - -
Seca4g10326 615 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
Seca4g10326 615 ProSiteProfiles Protein kinase domain profile. 303 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10326 Seca-Chr4 238771992 238774285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10326 13 591 Receptor kinase-like Gene Family AT3G28450 46.667 2.39e-179 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Seca4g10326 PK_Tyr_Ser-Thr 4.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10326 - - psat:127076602 994.571