Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10319 ATGTTGGCTTCGTTCCCTGGCTACACAAGACCAAACCCTTGTCTTGTTAAGCTCAGGCCATCGTTATCTATGCGACATGACTACCCCCTTGCAAGCAAAATTATTGTGAAAAATTTACCATATTCTACCGGCGAGACTACTTTGCAGAAGGAATTTTCAAATTTTGGCAAGATAGCTGAAGTTAAAATGATTAAAGATGTGAACACAAAAAGATCTAAAGGGTATGCTTTTATTCAATATACATGTCGAGATGATGCCATGCTTGCACTAGAAACCATGGATCAAAAGGATTTTTATGGTCGAACTATCTATGTAGAAGTTGCAAAATTGGGTCGGGATGATTTTGAAGCACCCCCGAGGACCTCAGGGCCCCCAAAGAAGTGGAATTTACCAGAGCAAGGGGAAGTGGTAGATTGCTGGTACTGA 426 0.4131 MLASFPGYTRPNPCLVKLRPSLSMRHDYPLASKIIVKNLPYSTGETTLQKEFSNFGKIAEVKMIKDVNTKRSKGYAFIQYTCRDDAMLALETMDQKDFYGRTIYVEVAKLGRDDFEAPPRTSGPPKKWNLPEQGEVVDCWY. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10319 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Seca4g10319 141 Gene3D - 21 134 IPR012677 -
Seca4g10319 141 SUPERFAMILY RNA-binding domain, RBD 26 123 IPR035979 GO:0003676
Seca4g10319 141 SMART rrm1_1 33 106 IPR000504 GO:0003723
Seca4g10319 141 CDD RRM_SF 34 106 - -
Seca4g10319 141 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 32 130 - -
Seca4g10319 141 FunFam glycine-rich RNA-binding protein 4, mitochondrial 20 135 - -
Seca4g10319 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10319 Seca-Chr4 238689177 238691018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10319 18 113 Eukaryotic Initiation Factors Gene Family AT2G36660 31.000 7.19e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10319 - - gmx:100305971 237.654