Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10314 ATGGCTGAGCAAATCCCCTATTGTGTTGCTTCAAGCCTCATTGAAAAGTTAGCTTCTGCCGCCTTTCATGAACTTGGACGAATTTATGGTGTCACTCAAGAGTTGGAAAGGCTGAAGAATACAGTTGAATCCATCAAAGCTGTGCTTCTTGATGCTGAGGAGAGACAAGAACGAGATCATGCTGTTCAGATCTGGATAAGAAGGCTCAAAGATGTGCTTCATCCTGCAGAAGACTTGCTTGATGAATTTTCCATTCAAGACATGAGACACAAACTGGAAGCAGGTAGTGGCAGCAAAGTCAAAGAGGTATTTCATTTCTTATCTCCAACTCGAGTTGCTTTTCGCCGTGAGATGGCTCATAAAATTGAAAAAATACGAAAAAATTTCAATCATGTAGTACAAGAAATGTCTCAGTTGAATTTAAGCCCAAGAGTTGTGGTGGTTAAACAAACTGACAGTGTAAGTAGGGAGACTAGTTCATTTGTGTTAGAATCAGATATCATTGGAAGAGAAAATAGTAAAAAGGAGATCATAAGTTTGTTAAGGCAATCGCATGAAAATCAAAATGTTTCTGTGATTGCAATTGTTGGTATCGGTGGTTTAGGCAAGACAACTCTTGCTCAATTGGTATATAATGATGTGGAAGTGCAAAATTTTTTCGAAAAACGAATATGGGTATGTATCTCTGATAACTTTGATGTCAAGACTATTGTGAAGAAAATGCTAGAGTCATTAATCCATAGCAAAGATGATGAGAGAACATCAGATAAGTTGGTGTTAGAGAAGTTATCATTAGACAGCTTACAAAATAAGGTTCGTGATCATTTAACTGGTAAAAGATACTTATTAGTTCTTGATGACATTTGGAATGAAAGTCGTGAAAAATGGGCTCATTTAAGAACTTACTTGATGTGTGGTGCTCAAGATAGTAGAGTTCTAGTGACAACTCGTAGTAAAATTGTGGCACAAACAATGGGTGTAAGCGAGTCCTATGTTTTAAATGGTTTGACTTCCGAAGAATCTTGGAGTTTGTTAAAGAAAATTACATTTGGGGATGATACCAGGAGAGTGAATCAAACTTTAGAATCAACGGGTAAAAAGATAGCAGAAAAGTGTAGAGGTGTTCCATTAGCAATTAGAACAATGGGAGGCATACTACAGAGTAAAAGTGAAGAAACTGAATGGTTTGGTGTTTTACAAGGTGACTTTTGGAAATTATGTGAAGAGCAAGATAATATCATGCCAGTTTTAAAACTCAGTTACCAAAACCTGTCACCTCAACAGAGACAATGTTTTGCGTATTGCTCTCTATATCCTAAGGACTGGGAAATTGAGAAGGATGAGTTGATTCAACTATGGATGGCACAAGGTTATCTTGAATGTTCAACTGAAGGAGAGCTCATGGAAGATATCGGCAACCACTTTGTAAAGATCTTTATGATGAAGTCATTTTTTCAAGATGCAAAAATAAATGAAGATGGTGATATATTTAGATTCAAGATTCACGATTTAATGCATGATCTTGCGATGCATGTAGCTGGAAATGATTGTTGTTACTTGGATGGTGAGGAAAAAAGACTTGTGGGAAGACCCATGCATGTAATGTTGAAACCTAATGCCATTAGTTTGTTGGGCTCATTGGATGCAAGCAGGCTTCGAACTTTGATTTTATGGTCTGACCTTGACAATGAATTAGAGAAATTGAAAGAGGAGAAATTATCTGTTATTTCAAATTTCAAATACTTACGAGGCTTGAGGGTGTCACATTCTTCCTTAGGTAAGTTGTCTACTTCAATTGGAAAAATGAAGCATTTAAGATATCTTGACTTGTTGCGTTGTGACCAACTAGCAGTTCTTCCCAAATCCATAAGCAATCTTGTCTGCTTACAAACATTGAAATTGAAGAACTCTGAAGGACTTGAATTTTCTACAAAATTTGTCTCAAGATTAATCAATTTGAGATACCTTAACATTCAAGGTTCAGAATCCATTGAAGACAATATACTAATTAGTCTTGGAATATTGACAGTGCAAAGTGTGATATATTTAAACCGACTTTCTTCACTCACAAATATTGTTAAAATCTCTCTTAGTGCTTGTGGAAGTTGTCGGTACCTCCCACCGTTGGAACGTCTCCCGTTCCTTAAGTCACTTTGTATATCTTACCTTCATGAATTGGAGTACATATATTTTGAAGAGAGTCTTCCTGTAACATTCTTCCCATCTTTGGAGAGACTCATTTTTATGTGGTGTGGAAAGCTCAGGGGATGGTGTAGGATGGGAGATGATTTCAATGATGTTAACAATTATTCACATCATCTCTCATTTCCTCGTCTATCTCAATTACACATCATTGGATGTCAGAGGTTGATTTGCATGCCTAATTTTCCAAATCTTGATAAGATTTTGACATTGAGTGAATGTAGTGTGGAGCCATTGGAAGCAACACTAAACATAGCGGTTGACTTCCCTCCTCTTTCCATGCTCAAATCATTAGAAATTGCTGGAAATCTGAACATTGAAAAACTTCCAAAGGATTGGATGCAAAATCTTACTTCTCTTGAGCATCTTAAATTTCAAGGCTTTTCAAGTGAAAAATTTCAGGAAATTGAAATTTGGTTCAAGGACATCGCCAACTGTCTTCCTTCTTTGCACAAAATCAATGTGGAATTTGGTACAAACTTAAAGGCGTTGCCAGATTGGATATGCAACCTCTCATCACTTCAGCAACTCAAAATTATGTTTTGCTTTAATTTGGAATCGCTACCTGAAGAAATGCCTCGTCTTACCAACTTACACACCTTAGAAATCCTTGGATGTCGCCTCTTAATCAAACAATGCCAAACAAAAACAAGTGCAACTTGGCCCAAAATTGCTCACATCCCAAACATAATCTTACATTGA 2904 0.3674 MAEQIPYCVASSLIEKLASAAFHELGRIYGVTQELERLKNTVESIKAVLLDAEERQERDHAVQIWIRRLKDVLHPAEDLLDEFSIQDMRHKLEAGSGSKVKEVFHFLSPTRVAFRREMAHKIEKIRKNFNHVVQEMSQLNLSPRVVVVKQTDSVSRETSSFVLESDIIGRENSKKEIISLLRQSHENQNVSVIAIVGIGGLGKTTLAQLVYNDVEVQNFFEKRIWVCISDNFDVKTIVKKMLESLIHSKDDERTSDKLVLEKLSLDSLQNKVRDHLTGKRYLLVLDDIWNESREKWAHLRTYLMCGAQDSRVLVTTRSKIVAQTMGVSESYVLNGLTSEESWSLLKKITFGDDTRRVNQTLESTGKKIAEKCRGVPLAIRTMGGILQSKSEETEWFGVLQGDFWKLCEEQDNIMPVLKLSYQNLSPQQRQCFAYCSLYPKDWEIEKDELIQLWMAQGYLECSTEGELMEDIGNHFVKIFMMKSFFQDAKINEDGDIFRFKIHDLMHDLAMHVAGNDCCYLDGEEKRLVGRPMHVMLKPNAISLLGSLDASRLRTLILWSDLDNELEKLKEEKLSVISNFKYLRGLRVSHSSLGKLSTSIGKMKHLRYLDLLRCDQLAVLPKSISNLVCLQTLKLKNSEGLEFSTKFVSRLINLRYLNIQGSESIEDNILISLGILTVQSVIYLNRLSSLTNIVKISLSACGSCRYLPPLERLPFLKSLCISYLHELEYIYFEESLPVTFFPSLERLIFMWCGKLRGWCRMGDDFNDVNNYSHHLSFPRLSQLHIIGCQRLICMPNFPNLDKILTLSECSVEPLEATLNIAVDFPPLSMLKSLEIAGNLNIEKLPKDWMQNLTSLEHLKFQGFSSEKFQEIEIWFKDIANCLPSLHKINVEFGTNLKALPDWICNLSSLQQLKIMFCFNLESLPEEMPRLTNLHTLEILGCRLLIKQCQTKTSATWPKIAHIPNIILH. 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10314 967 PRINTS Disease resistance protein signature 372 386 - -
Seca4g10314 967 PRINTS Disease resistance protein signature 192 207 - -
Seca4g10314 967 PRINTS Disease resistance protein signature 600 616 - -
Seca4g10314 967 PRINTS Disease resistance protein signature 275 289 - -
Seca4g10314 967 FunFam Probable disease resistance protein At1g63360 421 511 - -
Seca4g10314 967 Gene3D - 335 420 IPR042197 -
Seca4g10314 967 PANTHER DISEASE RESISTANCE PROTEIN RP 35 867 IPR044974 GO:0006952
Seca4g10314 967 Pfam Rx N-terminal domain 10 98 IPR041118 -
Seca4g10314 967 SUPERFAMILY L domain-like 486 794 - -
Seca4g10314 967 FunFam Probable disease resistance protein At1g61300 148 330 - -
Seca4g10314 967 Gene3D - 10 146 - -
Seca4g10314 967 CDD RX-CC_like 7 127 IPR038005 -
Seca4g10314 967 Gene3D Ribonuclease Inhibitor 806 955 IPR032675 -
Seca4g10314 967 Gene3D Ribonuclease Inhibitor 538 805 IPR032675 -
Seca4g10314 967 Pfam NB-ARC domain 171 423 IPR002182 GO:0043531
Seca4g10314 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 435 IPR027417 -
Seca4g10314 967 Coils Coil 35 55 - -
Seca4g10314 967 Gene3D - 149 332 IPR027417 -
Seca4g10314 967 Gene3D - 421 512 IPR036388 -
Seca4g10314 967 SUPERFAMILY RNI-like 776 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10314 Seca-Chr4 238632730 238635633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10314 189 512 WRKY Transcription Factor Family AT5G45050 24.233 4.75e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10314 - - tpra:123883200 1160.98