Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10287 ATGCCTTTGGAGAACTTCTACAACATATTTGGTGCAACAAAGCTCAGAAGTCTTGTTTGGACTACATGGAAACCATTAGACTCACCATGCTTGTTGGAGGATGTAATTTTACCTGCGGAACTTGGGTTCTTTGTGATCTTGTTAATCCAACTCCTAAGAAAATGTGTGAACCTGGTCAACAAGCAAGACAAGGCCTCAGATCCTGTCAAAGAGATGCACCCAATTGCAATAAAATTTGGTTTTGCATACAAAGTTAGCTTAGTTTGCACTACTTTATTGTTGGTTGTTCATGGCTTAATGCTATTACTGATGCTTAATCATGAGACTCAGTGCACCTCTAAACTTCAGGCTTATACATCAGAGATAGTTCAAGTTCTATCATGGGCAATTAGTCTAATAGCAATATGCAAGATATCAAAATCAAATACTCTCTTCCCTTGGATTCTAAGGGCTTGGTGGGTTTGTAGTTTCCTTATGTCCATTATCAGCACAGCCCTTCATGCCTATTCCAGTGTCAGCAGCAAGGGTCAGATTGGTACAAGAGAATATGCAGATTTCGTTGGTTTGCTTGCTTCAACATGCCTTTTAGTTCTTTCAACAAGAGGGAAGACAGGCATTGTCTTAAGTGCAACAAATGGTATATCTGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCAGAGTGTCAAAGGGAGTCTCCTTATGGCAAAGCTACTCTTCTCCAACTCATTAACTTCTCCTGGCTCAATCCATTGTTTGCTGTGGGGTATAGGAGACCCCTTGAACAGAATGACATTCCTGATGTTGATCTTAAGGACTCTGCTGAATTTCTATCCTGCTCCTTTGATGAGAGGATTAGACAAGTTAAGGAGAAAGATGGGACTACAAACCCATCTATCTACAAGGCAATCTATTTATTTGCTAGGAAGAAAGCAGCAATCAATGCACTTTTTGCAATAGTATGTGCTTCAGCATCATATGTTGGTCCATACTTGATTACTGACTTTGTGGATTTCCTAGGGGAAAAGGGAAACCGTGGGTTAAAGAGTGGATACCTTCTGTCACTAGCTTTCTTATGTGCCAAAATGATTGAAACCATTACTCAGAGGCAATGGATTTTTGGTGCCAGGCAATTAGGCCTTCGCCTTAGAGCTGCATTGATATCACATATATATAAGAAAGGCTTACATCTGTCAAGTAGATCACGCCAAAGTCATACAAGTGGTGAGATAATGAACTATATGAGTGTAGATGTGCAGAGAATTACAGATTTTGTTTGGTATGTGAATGTGATATGGATGCTGCCTATACAAATTTCTCTAGCTGTCTTCATTTTGCAAACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCTACATTGGCAGTTATGACTTTGAACATACCTCTTACAAAAATACAAAAAAGGTACCAAGCCAAGATCATGGAAGCTAAGGACAATAGGATGAAAGCCACTTCAGAAGTTCTTAGAAACATGAGGACTTTGAAACTTCAAGCATGGGATAGTGAATTCTTTCAAAGGATAGGAGCATTGAGGAAAGTAGAGTATGATTGGTTAGTCAAGTCATTAAGGCAAGCAGCATTTACAGCTTTTATTTTTTGGGGATCTCCTACATTCATTTCTGTGGTAACCTTTTGGGCATGTATGTTCATGGGGATTGAACTGACAGCTGGAAGGGTCTTATCAGCATTTGCCACATTTAGAATGTTACAAGATCCTATATTTAGCTTACCTGATTTACTCAATGTCATTGCTCAAGGAAAAGTTTCAGTTGATAGGATTGCTTCTTTCCTCAAGGAGGAAGAAATCCAACATGATGTCATTGAATATGTTGCAAAGGACAAAACAGAATTTGACATAGTTATTGATAAAGGGAGATTCAGCTGGGATCCTGAGTCAACTAGTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGAGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTTCTCTCAGGCATTTTGGGAGAGATATATAAACAGTCTGGGACAGTCAAGATTAGTGGAACAAAAGCTTATGTTCCACAGTCAGCATGGATACTGACTGGAAATATCAGGGACAATATTACCTTTGGAAAAGAGTTCAATGATGATAAGTATGAGAAAACTATTGAAGCTTGTGCATTGAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATTGGAGAAAGAGGGATTAATATGAGTGGAGGACAGAAGCAAAGGATACAAATAGCTAGAGCAGTTTACCAAGATGCTGATATATACCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACCGGCACCCACCTCTTCAAGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTGTACTTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATCCTGGTGATGCAAAATGGAAGGATTGCACAAGCTGGAAATTTTGAAGAACTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTCGGTGCTCATAGCAAAGCTCTAGAGTCAATTCTTATGGCTGAAAATTCAAGTAGAACGAATTTAAATCCAATAGCTGAAGGGGAATCCAACACCAACAATTACAACTCAAATGTTAAACATGTGCACACACAGCATGACACAGTGCAAGATAATCCTCCAGACAACAAAGGAAATGATGGAAAATTAGTGCAAGAAGAAGAAAGAGAAACAGGAAGCATAGCAAAAGAAGTTTACTGGTCTTATTTGACCACTGTTAAAGGGGGTCTTCTGGTACCATTCATTCTCTTGGCACAGTCCTCTTTCCAAATACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACATCAAGTGATGCAAAGCCTTTATTTGAGATGAATTTCATACTACTTATTTATATGATACTGTCTGTTGCTGGTTCATTTTGTGTTCTGGCAAGAGCCATGTTGGTGTTAAATGCTGGACTTTGGACAGCACAGACACTTTTCACAAACATGTTGAATAATATGCTCCGAGCCCCAATGTCATTTTTTGATTCAACACCAACTGGAAGAATCTTGAATAGGGCCTCCACAGATCAAAGTGTGCTAGACTTGGAAATGGCAAACAAATTAGGATGGTGTGCTTTCTCAGTGATACAGATTCTAGGCACTATTGCAGTGATGTCTCAGGTAGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACAGCAGTCTGTGTATGGTATCAACGATATTATACACCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATTACTCCAATTCTCCACCATTTTTCAGAATCCTTAGCAGGATCAGCATCAATTAGAGCTTTTGATCAAGAAGATCGTTTCATGTACACAAATCTTGTCCTTGTGGATGGCTTCTCAAAGCCATGGTTCCATAATGTATCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTTGCCTTCTCACTAGTCTTGCTAGTTAGCCTCCCTGAAGGAATAATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTTAATGTCTTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTATACAAATATAGCAAGTGAAGCACCTCTTGTGGTTGAAGACCACAGGCCACTAAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTGCAGATACGTTATGCTGAACACCTACCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGGAAGAAAATTGGTGTTGTAGGACGTACTGGAAGTGGAAAATCAACCCTCATACAAGCACTTTTCAGGATTGTTGAACCAAGAGAGGGAAGCATTATAATTGACAATGTGGACATATGCAAGATAGGTCTCCATGACTTAAGGTCAAGACTTAGCATTATCCCACAAGATCCAGCCTTGTTTGAAGGAACAGTTAGAGGAAACTTGGACCCACTGGAGCAATACTCTGACATTGAAGTGTGGGAGGCTTTAGATAAATGTCAACTAGGTCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGATAGCTCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGACAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAGAAAAGCAGCATATTAGTCCTAGATGAAGCAACAGCCTCTGTGGATTCTGCAACTGATGGAGTGATACAAAATATCATCAGTCAAGAGTTCAAAAATCGAACTGTTGTCACAATAGCTCATAGAATCCACACAGTTGTTGATAGTGATTTGGTTTTGGTGCTCAGTGATGGGAGGGTTGCAGAATATGATGAACCATCAAAATTACTTGAAAGAGAAGATTCCTTCTTTTTCAAACTCATAAGGGAGTATTCTAACAGATCACATAGCTTCAACAGCTTGGCAGCTCAACATGTCCAAAGCAGGGAATAA 4545 0.3949 MPLENFYNIFGATKLRSLVWTTWKPLDSPCLLEDVILPAELGFFVILLIQLLRKCVNLVNKQDKASDPVKEMHPIAIKFGFAYKVSLVCTTLLLVVHGLMLLLMLNHETQCTSKLQAYTSEIVQVLSWAISLIAICKISKSNTLFPWILRAWWVCSFLMSIISTALHAYSSVSSKGQIGTREYADFVGLLASTCLLVLSTRGKTGIVLSATNGISEPLLGEKTEKHSECQRESPYGKATLLQLINFSWLNPLFAVGYRRPLEQNDIPDVDLKDSAEFLSCSFDERIRQVKEKDGTTNPSIYKAIYLFARKKAAINALFAIVCASASYVGPYLITDFVDFLGEKGNRGLKSGYLLSLAFLCAKMIETITQRQWIFGARQLGLRLRAALISHIYKKGLHLSSRSRQSHTSGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILQTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQAKIMEAKDNRMKATSEVLRNMRTLKLQAWDSEFFQRIGALRKVEYDWLVKSLRQAAFTAFIFWGSPTFISVVTFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLKEEEIQHDVIEYVAKDKTEFDIVIDKGRFSWDPESTSPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEFNDDKYEKTIEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTVLFVTHQVEFLPAADLILVMQNGRIAQAGNFEELLKQNIGFEVLVGAHSKALESILMAENSSRTNLNPIAEGESNTNNYNSNVKHVHTQHDTVQDNPPDNKGNDGKLVQEEERETGSIAKEVYWSYLTTVKGGLLVPFILLAQSSFQILQIASNYWMAWVCPTSSDAKPLFEMNFILLIYMILSVAGSFCVLARAMLVLNAGLWTAQTLFTNMLNNMLRAPMSFFDSTPTGRILNRASTDQSVLDLEMANKLGWCAFSVIQILGTIAVMSQVAWQVFVIFIPVTAVCVWYQRYYTPTARELARLAQIQITPILHHFSESLAGSASIRAFDQEDRFMYTNLVLVDGFSKPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASEAPLVVEDHRPLSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQALFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDIEVWEALDKCQLGHLVRAKEEKLDSSVVENGDNWSVGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQNIISQEFKNRTVVTIAHRIHTVVDSDLVLVLSDGRVAEYDEPSKLLEREDSFFFKLIREYSNRSHSFNSLAAQHVQSRE. 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10287 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 594 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g10287 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1488 IPR027417 -
Seca4g10287 1514 Gene3D - 1242 1494 IPR027417 -
Seca4g10287 1514 SUPERFAMILY ABC transporter transmembrane region 927 1235 IPR036640 GO:0005524|GO:0016020
Seca4g10287 1514 FunFam ABC transporter C family member 3 1242 1494 - -
Seca4g10287 1514 CDD ABCC_MRP_domain2 1257 1477 - -
Seca4g10287 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1493 IPR003439 GO:0005524
Seca4g10287 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g10287 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 844 IPR027417 -
Seca4g10287 1514 Pfam ABC transporter 647 780 IPR003439 GO:0005524
Seca4g10287 1514 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Seca4g10287 1514 SUPERFAMILY ABC transporter transmembrane region 309 610 IPR036640 GO:0005524|GO:0016020
Seca4g10287 1514 MobiDBLite consensus disorder prediction 891 917 - -
Seca4g10287 1514 Coils Coil 475 495 - -
Seca4g10287 1514 FunFam ABC transporter C family member 5 903 1240 - -
Seca4g10287 1514 CDD ABC_6TM_ABCC_D1 314 602 IPR044746 GO:0140359
Seca4g10287 1514 Pfam ABC transporter 1276 1424 IPR003439 GO:0005524
Seca4g10287 1514 SMART AAA_5 1285 1477 IPR003593 GO:0016887
Seca4g10287 1514 SMART AAA_5 655 828 IPR003593 GO:0016887
Seca4g10287 1514 Pfam ABC transporter transmembrane region 952 1186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g10287 1514 Pfam ABC transporter transmembrane region 314 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g10287 1514 FunFam ABC transporter C family member 5 613 860 - -
Seca4g10287 1514 Gene3D - 623 854 IPR027417 -
Seca4g10287 1514 CDD ABCC_MRP_domain1 628 828 - -
Seca4g10287 1514 FunFam ABC transporter C family member 10 296 610 - -
Seca4g10287 1514 CDD ABC_6TM_ABCC_D2 940 1234 IPR044726 GO:0140359
Seca4g10287 1514 Gene3D ABC transporter type 1, transmembrane domain 904 1240 IPR036640 GO:0005524|GO:0016020
Seca4g10287 1514 Gene3D ABC transporter type 1, transmembrane domain 283 611 IPR036640 GO:0005524|GO:0016020
Seca4g10287 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 237 1496 - -
Seca4g10287 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 851 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10287 Seca-Chr4 238302794 238311780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10287 635 872 Calmodulin-binding Proteins AT2G36910 29.183 1.17e-20 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10287 - - gmx:100809749 2610.1