Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10271 ATGAGCCATTTCTATTTCCTTTTCCTCACTCTCACAATCCTCTTGTGTTCTTTCCATTCATTTGTTGATTGTAACCGTCTCATCCAACAAACTTGTAAGAATTGCTCAGAAACTGATTCCAACATAAATTACCAATTTTGCATAACTTCCTTTCAGTCAGACAGAAGGAGCCACTGTGCCAAAAACCTCTATGAATTAGGCCTAGTCTCCATCAAGCTAATCAGGCACAACATCACAGATACTAATGCTCAAATCAAAGAGCTTTTGAACAAGAAGAAGAAATTAGACCCATTTGTCAAAGAATGTTTGGATGATTGCCTTGATGTTTATTCTGACACCTTCACAACTCTTAGAGAAGCCATTAGAGATTACAGGGCCAAGCGCTATGGAGATTGTAATGTCAAGCTAAGCTCAGTCATTGATGCATCCACTACATGTGAAGATGGATTCAAGCAAAAGGATGATGCCATTTCGCCATTAACAAAGAGAAACAAGGACGTTTTTCAGCTTTCTGCTATAGCACTTTCAATTGTTAACATGCTCAATATAGACAAATTGAAGGGTACATTGTGA 573 0.3805 MSHFYFLFLTLTILLCSFHSFVDCNRLIQQTCKNCSETDSNINYQFCITSFQSDRRSHCAKNLYELGLVSIKLIRHNITDTNAQIKELLNKKKKLDPFVKECLDDCLDVYSDTFTTLREAIRDYRAKRYGDCNVKLSSVIDASTTCEDGFKQKDDAISPLTKRNKDVFQLSAIALSIVNMLNIDKLKGTL. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10271 190 Coils Coil 71 91 - -
Seca4g10271 190 CDD PMEI-Pla_a_1_like 32 180 IPR034088 -
Seca4g10271 190 SMART PMEI_2 23 177 IPR006501 GO:0004857
Seca4g10271 190 FunFam Putative invertase inhibitor 23 181 - -
Seca4g10271 190 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 182 IPR035513 -
Seca4g10271 190 Pfam Plant invertase/pectin methylesterase inhibitor 27 177 IPR006501 GO:0004857
Seca4g10271 190 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 181 IPR035513 -
Seca4g10271 190 NCBIfam pectinesterase inhibitor domain 3 181 IPR006501 GO:0004857
Seca4g10271 190 PANTHER OS02G0537100 PROTEIN 8 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10271 Seca-Chr4 237988196 237988768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10271 69 184 Carbohydrate Esterase AT3G14310 30.469 1.11e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10271 - - gmx:100306248 294.664