Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10268 ATGGCATCAACATTTCTCACCTTACCAAATCCTTTCCTACACAAAACCAGTGCCGCCTCTTTCTCTAACCAGAGACTCCCAGTTTTGAAGAGGAACTCCTTGAAGATTAATGCAGTTGCCAAGAAATGGGAACCCACCAAGGTTGTGCCCCAGGCTGATAGAGTTCTCATTCGTCTGGAGGAGCTATCAGAAAAAACAACTGGTGGAGTTCTGTTACCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAGTCCTAACTGTTGGCGCTGATGCTGGAGAACTAAAGGCTGGAACAAAGGTACTATTCACTGACATAAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCTGTAAAGCAAGTGACTTATTGGCCACGGTTGAGTAG 405 0.4519 MASTFLTLPNPFLHKTSAASFSNQRLPVLKRNSLKINAVAKKWEPTKVVPQADRVLIRLEELSEKTTGGVLLPKSAVKFERYLVGEVLTVGADAGELKAGTKVLFTDINAYEVDLGTDAKHCFCKASDLLATVE. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10268 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca4g10268 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca4g10268 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 46 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca4g10268 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
Seca4g10268 134 Pfam Chaperonin 10 Kd subunit 47 132 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca4g10268 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
Seca4g10268 134 FunFam 10 kDa chaperonin 43 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10268 Seca-Chr4 237973686 237977990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10268 1 134 Calmodulin-binding Proteins AT5G20720 30.128 5.62e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10268 K04078 - gmx:100306026 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10268 4 237973686 237977990 Seca4g10268 4 237973686 237977990 ECH