Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10266 ATGGCTTCTCCTCCACCCGTGTCACTAAACGTCGTCGGATCAGACACGTACGCAACAGTTTCTAGTTCTGTTACCCCACCGTCACCTCGCCGTCCATCTCCGTTACAGAGCCTGAGTCCAAGCATTCTCATCATCGTAACGGTCTTAGCCGTTACTGTTATTGTCTCTCTCGCTCTCTGCTTCCTCCTCCGCCACCTCAACCGTCGCTGCCTCCGCCGTCTCTCCGCTGCGAACTCCGCTTCGTCGACTCCGGCATTCAGTTCTAGCCGCCGCATCTCGCCGGAACTTCCTCCTTCTGCGGCCACCTCCATCATCGACTCGCTCCCTCTGTTCGCTTTCTCCGCTGTCACGCGCCGCTCCGCTGCCGCCGCCGCTGACTGCGCCGTGTGCCTCTCCAAGTTCAACCAGAACGACCTTCTACGCCTTCTCCCTCTCTGTTGTCATGCTTTCCACGCAGAATGCATCGACACGTGGCTCCGATCCAACCTCTCCTGTCCGCTCTGCCGGTCCTCCATTTTCGCCTCCGATTCGGACCTCGCCAAGGTTCTCCGATCGACGTCCTCCGACAGTTTCCGCATCGAGATAGGGAACGTGAGTCGCCGGGGAACCGCGTCTGACGCCGCCGTCGATGCGCGCGGCGGCTCGAGGTCTAGGTCCTATTCCATTGGATCGTTCGATTATTTCGTTGATGAGGAATCGGAGGTTCCATTCAGCCACGCTCACCGGAGAAGTGTCTCCGATCAGAAGGATGTTCCGGTGACAACGGCGGATGAGTCTCCAGCGATTCAAACGGCGCCTCACGAAGCCGCACTCGCCGGTGAGGTTGCTGGTGTTAGAAGCTGGCTGAAGGAGTACATGGATAGAGTCTCTGCTTCTATATCGTCCAGAACGATGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGTGGGAGTAGTCGCCGAAGCGACGTCGTTCCAGTCGATGTGGATTATGACGTGGAAGGTAACCGAATTGGGGAGGAGATCACAGAAATGTTTCGATGGCTCTCAGGGGTATGA 1038 0.5742 MASPPPVSLNVVGSDTYATVSSSVTPPSPRRPSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRLSAANSASSTPAFSSSRRISPELPPSAATSIIDSLPLFAFSAVTRRSAAAAADCAVCLSKFNQNDLLRLLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFASDSDLAKVLRSTSSDSFRIEIGNVSRRGTASDAAVDARGGSRSRSYSIGSFDYFVDEESEVPFSHAHRRSVSDQKDVPVTTADESPAIQTAPHEAALAGEVAGVRSWLKEYMDRVSASISSRTMSFRSSGRFFSGGSSRRSDVVPVDVDYDVEGNRIGEEITEMFRWLSGV. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10266 345 CDD RING-H2_EL5-like 126 169 - -
Seca4g10266 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 178 IPR013083 -
Seca4g10266 345 SUPERFAMILY RING/U-box 108 175 - -
Seca4g10266 345 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Seca4g10266 345 FunFam E3 ubiquitin-protein ligase ATL6 91 175 - -
Seca4g10266 345 Pfam Ring finger domain 126 169 IPR001841 -
Seca4g10266 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 239 - -
Seca4g10266 345 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10266 Seca-Chr4 237954745 237955782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10266 19 193 C3H Transcription Factor Family AT4G28890 34.066 5.76e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10266 K10663 - gmx:100817751 336.265