Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10254 ATGGAAGACTTGTGGGAAAAGTGGATTTCTTCTTTGGAAATGGGTAGAAACAATTGCATTGATCAATCTCACGTGAACTCTCTGGATGAAGAAAATTTCCTCACAGAAATGGTGCAGCAGCAACAATCAAGTTTCCCTTTTGAGAGTGGTTACCACTCTTCTTCCACCATGCAATGTAACAAAAATGCTTTCACTATCATTGATGGTGGAACCACTACCTTATCGTATGATGAGGGGCAGGGGAAAATGCTCAATAATGATATCTTTAACTCTAACTCTATCATCTCTCATCAAGATGCTACTTCAAACAATCATATACCAAATCCAAACACATTCATTTTGTCATTCTCAACTATGGAACAAGCTCTCCATCATGAACCTTCTTCCCCCAAACTTGTTGATGCCCCTGCATCTGCCTTTTTGTGCAAAGAAACATCCCTGAATGACTATATCACTGAACCAAAGGTGAAGCAACAGACCAATAAGAAGTGTAGAAGCTCATCTGAGGTAAATGATCACATAATGGCTGAGAGAAAAAGGAGACAACAACTCACTGAGAGGTTCATAGCACTTTCTGCCACCATACCAGGATTGAAGAAGACAGATAAGGCATATATACTCCGAGAAGCTATCAATTATATGAAACAACTACAAGAGAGGGTAAAAGAGCTAGAGAATGAGAACAAAAGGAAAACAACTGAATCTACAGTGATATTCATCAAGAAATCCCAGGTGTGCTCAAAAGAGGAAACCACTTCTTCATCATGTGAAACGAACTCTGATAGATTCAAGAAAGCATTGCCTCAGGTTGAAGCAAGAGTCTTAGAGAAAGAGAAGGAAGTTCTCATTGGAATACACTGTGAGAAACAAAAGGACATTGTGCTTAGAATAATGGCATTGCTTCAAAATCTTCATCTCTCTCTTGCTAGTAGTAGCGTATTGCCATTTGGGACCTCCACTTTAAAAGTTACAATTATTGCTCGGATGGATGATGAATACTGCATGAGCGTGAATGATCTAGTAAAAAACCTGAGGCATGATCTCTTGGAGTTACATGACATTGAAGAGTAA 1071 0.3903 MEDLWEKWISSLEMGRNNCIDQSHVNSLDEENFLTEMVQQQQSSFPFESGYHSSSTMQCNKNAFTIIDGGTTTLSYDEGQGKMLNNDIFNSNSIISHQDATSNNHIPNPNTFILSFSTMEQALHHEPSSPKLVDAPASAFLCKETSLNDYITEPKVKQQTNKKCRSSSEVNDHIMAERKRRQQLTERFIALSATIPGLKKTDKAYILREAINYMKQLQERVKELENENKRKTTESTVIFIKKSQVCSKEETTSSSCETNSDRFKKALPQVEARVLEKEKEVLIGIHCEKQKDIVLRIMALLQNLHLSLASSSVLPFGTSTLKVTIIARMDDEYCMSVNDLVKNLRHDLLELHDIEE. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10254 356 Coils Coil 207 234 - -
Seca4g10254 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Seca4g10254 356 SMART finulus 174 223 IPR011598 GO:0046983
Seca4g10254 356 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983
Seca4g10254 356 Gene3D - 165 237 IPR036638 GO:0046983
Seca4g10254 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 235 IPR036638 GO:0046983
Seca4g10254 356 PANTHER BHLH TRANSCRIPTION FACTOR 27 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10254 Seca-Chr4 237683428 237688028 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10254 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.556 2.45e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10254 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10254 - - gmx:100786209 391.734