Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10250 ATGGAGGAGGATAATAATTTCTTCAATCAAAGGCAGAGAATGAACTTTTTCAATTTGCAGCAGCAAGTTTTGTGTCATGAAACAGAAAGCCACTATCCCTACCCTTCTTTATCCAACACTCTTGTTGAGGCTTCCACCACCACCACCAATTTGCAAAGATCTCATCTTTATGTCCAAAACAACCCTTCAACTACCATTCTTGACAAGTTCATGAGTGAGACAGCATCTTTTCACAGCTTTGGCACTAACAGCATCCCCAAAGATGGTGCAGAAAATGCTCTCTCCAGCCACATTTTGCCTTTTATGAACTCAACTACTGTGGAACCTGTCAGCAACATGAGACATGGCTCTGTTTTAGGGTCCTTCAAAAGGAACCATAATTGCAAACCAGGGACTCACAAGAAGGTTAGAAGCTCCGCTGAGACAGCAGGTCACATAGAGGCAGAGAGAAAAAGAAGACAGAAAATGACTCAGAACTTCATAGCACTTTCAGCCATCATTCCTGGCTTGAAGAAGACAGACAAGTCTTATATACTTCAAGAAGCAATCAATTATGTGAATCAACTTCAAGAGCGTGTAAGAGAACTAGAAACAGAGAATGAAAAGATAAATGCACATTCAGTAATGCTGAACAAGAAACTCATCATCAGGCTCCCCATGAATGAAGACTCAACCACCACAAGTGAAACAAACTTCGTTGGTAATACTAATAGATTTTTTCTTGAAGCACTACCTGAGGTTACAACAAGAGTCTCAGAGAAGAATGTGCTCATTGCAATCCATTGTGAGAAGCAAAATGTCGTTGTACACAAAATACTAAACTTGCTTGCAAATCTCCACCTCTCTATAACATCTAGTAGCGTATTGCAATTTGGTGCTTCCACCCTTATAATCACAATTATTGCCCAGATGGATGAGGAGTATAGTATGGCAATAGATGATCTGGTGAAAAACCTAAGGAAAGAGTTGCTGAAGTCACATGATGTTCAACAATGA 996 0.4006 MEEDNNFFNQRQRMNFFNLQQQVLCHETESHYPYPSLSNTLVEASTTTTNLQRSHLYVQNNPSTTILDKFMSETASFHSFGTNSIPKDGAENALSSHILPFMNSTTVEPVSNMRHGSVLGSFKRNHNCKPGTHKKVRSSAETAGHIEAERKRRQKMTQNFIALSAIIPGLKKTDKSYILQEAINYVNQLQERVRELETENEKINAHSVMLNKKLIIRLPMNEDSTTTSETNFVGNTNRFFLEALPEVTTRVSEKNVLIAIHCEKQNVVVHKILNLLANLHLSITSSSVLQFGASTLIITIIAQMDEEYSMAIDDLVKNLRKELLKSHDVQQ. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10250 331 Coils Coil 179 206 - -
Seca4g10250 331 PANTHER BHLH TRANSCRIPTION FACTOR 16 325 - -
Seca4g10250 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Seca4g10250 331 SMART finulus 146 195 IPR011598 GO:0046983
Seca4g10250 331 MobiDBLite consensus disorder prediction 121 144 - -
Seca4g10250 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 209 IPR036638 GO:0046983
Seca4g10250 331 Pfam Helix-loop-helix DNA-binding domain 145 190 IPR011598 GO:0046983
Seca4g10250 331 Gene3D - 132 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10250 Seca-Chr4 237611579 237617047 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10250 72 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.698 7.63e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10250 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10250 - - psat:127076674 253.832