Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10249 ATGTTCCGCCGCGCAACAGCAACCCTCTTGGCGCGCGCCGCCCCCAGTCGCCGCTTCTCTACCGATGTGGCAGCGGCAGCGACCACCACGGACTCGAGCTTCGTGGAGGCGTGGAAGAAAGTGAGCCCCAACATCGACCCACCCAAGACTCCCCTCGCCTACATGAAGCCTCGTCCCCCTACACCTTCTACCCTCCCTTCTAAGCTCACCGTCAATTTCGTCCTTCCCTACGCTTCCCAATTGTCCGCAAAAGAGGTTGATATGGTCATAGTACCAGCAACAACTGGTCAGATGGGTGTTCTCCCAGGACATGTAGCAACAATCGCAGAGTTGAAACCTGGGGTCCTATCTGTACATGAAGGGAATGATGTGACCAAGTATTTTGTCAGCAGCGGCTTTGCTTTCATCCATGCAAACTCTGTTGCTGATATAATAGCTGTTGAGGCTGTACCAGTAGATCGAATTGATGCAAACCTAGTCCAGAAAGGTCTTCAAGAGTTCACTCAGAAGCTGAGCACAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGCGCCCTCAACGCAGCTCTTTCAGCCTAA 600 0.525 MFRRATATLLARAAPSRRFSTDVAAAATTTDSSFVEAWKKVSPNIDPPKTPLAYMKPRPPTPSTLPSKLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPVDRIDANLVQKGLQEFTQKLSTATTDLEKAEAQIGVDVHSALNAALSA. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10249 199 Hamap ATP synthase epsilon chain [atpC]. 67 187 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca4g10249 199 Gene3D - 59 155 IPR036771 -
Seca4g10249 199 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 69 141 IPR020546 GO:0015986
Seca4g10249 199 Coils Coil 164 184 - -
Seca4g10249 199 CDD F1-ATPase_delta 69 192 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca4g10249 199 FunFam ATP synthase delta 58 155 - -
Seca4g10249 199 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 69 150 IPR036771 -
Seca4g10249 199 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 29 198 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca4g10249 199 NCBIfam ATP synthase F1 subunit epsilon 74 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Seca4g10249 199 Gene3D - 156 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10249 Seca-Chr4 237599156 237603652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10249 1 199 Primary Pumps ATPases AT5G47030 70.854 8.44e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10249 K02134 - gmx:100799603 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10249 4 237599156 237603652 Seca4g10249 4 237599156 237603652 ECH