Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10244 ATGAATTGCTTTTACTACTTCAAAGACAAATCCAGGAGCAGGAGGCAAAGATCAGCACCTGAACTGAAAAAGCAAGAGAAACTCCAGTTTTCAGGGGATGAAAGAGTCACCAAGTCTTCATGCTCATCTGCCTCACCTCGCGGTATACCAGAGCTGTATGAGGAGAAGGCTCAGAATTTAAGGGCCTTCTCCTTCACAGAGCTCAAACGTGCAACAAATGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTATTTAAAGGTTCAATCAAGCCTGTTCATGGGGATGGTGATCCTATTTTAGTTGCCATCAAAAGGCTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGGTGAAAGAGGCATCCAGAGACTACTTGTGTATGAATACATGCCGAATAAAAGCTTAGATTTTCATCTTTTCAATAAAGCATGTGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCTTATTTGCATGAAGAATTAGAAATTCAGGTCATATATCGAGATTTTAAATGTTCAAATGTACTACTGGATGAAAATTTTAAGCCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGGAATACTCATGTTTCAACTGCTGTGATGGGAACATATGGTTATGCTGCTCCAGATTACATAGAGACCGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTATATGAAATGCTTACCGGGAGGCGTTCATTGGAAAGAAACAGGCCCAAAACAGAGCAGAAACTTTTGGAGTGGGTGAAGCAATATCCTCCTGATAGCAAAAAGTTTGATTTGATAATGGATGCAAGACTTGAAGGACAATATTCCATTAATGTAGCACGAAAATTCGCCAAACTCGCGGATCATTGCCTGCATAAGAGTGCGAAAGATCGGCCAACAATGAGTCAGGTGGTAGAGATATTGAAGCAGATAATCCAAGATGAAGAGCACCCTGAAGAGAAAAGCATTGAGGTATCTGAAAATGATCCAGTTGAGCCTGAAGAAAAGGCAAGTGAATCAGCCTCTTCAGAGTTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAGCATGTAGAGAGTGCTAGTAGGAGAAGATTTATGATCCTTCAGAGAGCCAATGTGTCTTCATAG 1281 0.4161 MNCFYYFKDKSRSRRQRSAPELKKQEKLQFSGDERVTKSSCSSASPRGIPELYEEKAQNLRAFSFTELKRATNDFSRLLKIGEGGFGSVFKGSIKPVHGDGDPILVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDGERGIQRLLVYEYMPNKSLDFHLFNKACDPLPWKTRLEIALGAAQGLSYLHEELEIQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVAGNTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSLERNRPKTEQKLLEWVKQYPPDSKKFDLIMDARLEGQYSINVARKFAKLADHCLHKSAKDRPTMSQVVEILKQIIQDEEHPEEKSIEVSENDPVEPEEKASESASSELWKKRMEHLAKLGEHVESASRRRFMILQRANVSS. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10244 426 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10244 426 Gene3D Transferase(Phosphotransferase) domain 1 161 381 - -
Seca4g10244 426 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 370 - -
Seca4g10244 426 MobiDBLite consensus disorder prediction 364 392 - -
Seca4g10244 426 MobiDBLite consensus disorder prediction 11 33 - -
Seca4g10244 426 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Seca4g10244 426 SUPERFAMILY Protein kinase-like (PK-like) 58 370 IPR011009 -
Seca4g10244 426 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Seca4g10244 426 PANTHER OS01G0588500 PROTEIN-RELATED 27 360 - -
Seca4g10244 426 CDD STKc_IRAK 81 359 - -
Seca4g10244 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca4g10244 426 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Seca4g10244 426 MobiDBLite consensus disorder prediction 11 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10244 Seca-Chr4 237565680 237571312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10244 1 394 Glycoside Hydrolase AT3G07070 40.909 1.56e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g10244 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10244 - - gmx:100784625 723.776