Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10240 ATGGCATCGATGGATGAGTCATGGGAATATTTGCTTTCTGATATGGAAATGGATGATTGTTATTTATTCAATGAATACAATTACATGAACTCTTTTGAGGAAGATTTAATCATCAATGGAGAGATTTCAGTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTTCACTACTCAAAACATCCATGTTGCTGCTGCAGGCAATAACAACACTATGAACAATTCACTTTCAGAAGAGAACACTGATTTTAGTCTCAAACAACATGCTTCCTCGGAGTGTTTAGAGGAATCCACCGTTGTAGTGCAAAATAATATTCCCAAGGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCGGTTGTTCCTGGCTTGAAAAGGATGGATAAGGCTTCTATCATCAAAAACACTATCGAATATGTGAAATGTCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAGACCAAGCAAAGAAAAACAGAATCCGTGGCATGCTTCAAAAACGACAAAGCCGTTGCTGATGACTCTGAACCTACGAAGAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTGAACATTGACATCATTGCTCAGGTGGACCACGAAGGATTCAGCATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGTGTTGTAATAACTTGCAACAATAA 957 0.3783 MASMDESWEYLLSDMEMDDCYLFNEYNYMNSFEEDLIINGEISVQSELSLEGQSSNSNFTTQNIHVAAAGNNNTMNNSLSEENTDFSLKQHASSECLEESTVVVQNNIPKETHEKHYDDEQSKENQEELQNRKSKRCRNSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKQRKTESVACFKNDKAVADDSEPTKKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVLCSNVLPFGNSTLNIDIIAQVDHEGFSMTMDDLVENVIKDLLGCCNNLQQ. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10240 318 PANTHER BHLH TRANSCRIPTION FACTOR 25 307 - -
Seca4g10240 318 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
Seca4g10240 318 SMART finulus 147 196 IPR011598 GO:0046983
Seca4g10240 318 Gene3D - 137 211 IPR036638 GO:0046983
Seca4g10240 318 Coils Coil 180 207 - -
Seca4g10240 318 MobiDBLite consensus disorder prediction 97 142 - -
Seca4g10240 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 207 IPR036638 GO:0046983
Seca4g10240 318 MobiDBLite consensus disorder prediction 109 142 - -
Seca4g10240 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10240 Seca-Chr4 237377121 237381890 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10240 121 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.704 8.14e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10240 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10240 - - gmx:100815351 265.774