Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10234 ATGGATGAGTCATGGGAATATTTGCTTTCTGATATGGAAATGGATGATTGTCATTTATTCAATGAGTACAATTACATGAACTCTTTTGAGGAAGAATTAATGATCAATGGAGAGATTTCAGTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTTCACTACTCAAAACATCCATGTTGCTGCTGCAGGCAATAACAACACTATGAACAATTCACTACTTTCGGAAGAAAACACTAATTTTAGTCTCAAACAACATGCTTCCTCGGAGTCTTTAGAGGAATGCACCGTTGTAGTGCCAAATAATATTCCCAAGGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGCGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAAAATCTCACCAAATTATTCATAGCACTTTCAGCGGTTGTTCCTGGCTTGAAAAGGATGGATAAGGCTTCTATCATAAAAAACACTATCGAATATGTGAAATGTCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAGACCAAGCAAAGAAAAACAGAATCCGTGGCATGCTTCAAAAACGACAAAGCCGTTGCTGATGACTCTGAACCTACGAAGAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTGAACATTGACATCATTGCTCAGGTGGACCACGAAAGATTCAACATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGTGTTGTAATAACTTGCAACAATAA 951 0.3764 MDESWEYLLSDMEMDDCHLFNEYNYMNSFEEELMINGEISVQSELSLEGQSSNSNFTTQNIHVAAAGNNNTMNNSLLSEENTNFSLKQHASSESLEECTVVVPNNIPKETHEKHYDDEQSKANQEELQNRKSKRCRSSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKQRKTESVACFKNDKAVADDSEPTKKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVLCSNVLPFGNSTLNIDIIAQVDHERFNMTMDDLVENVIKDLLGCCNNLQQ. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10234 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Seca4g10234 316 MobiDBLite consensus disorder prediction 110 138 - -
Seca4g10234 316 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Seca4g10234 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 205 IPR036638 GO:0046983
Seca4g10234 316 Coils Coil 108 128 - -
Seca4g10234 316 Coils Coil 178 205 - -
Seca4g10234 316 Gene3D - 136 209 IPR036638 GO:0046983
Seca4g10234 316 PANTHER BHLH TRANSCRIPTION FACTOR 11 305 - -
Seca4g10234 316 SMART finulus 145 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10234 Seca-Chr4 237178063 237180965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10234 76 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 42.041 2.40e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10234 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10234 - - gmx:100815351 268.47