Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10231 ATGGATGATTGTCCTTTATTCAATGAATACCATTACATGATGAACTCTTTTGAGGAAGAGTTAATGATCAATGGAGAGATTTCAGTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTTCACTACTCAAAACATCCATGTTGCTGCTGCAGGCAATAACAACACTATGAACAATTCACTTTCGGAAGAGAAGACTGACTTTAGTCTCAAACAACATGCTTCCTCGGAGTGTTTAGAGGAATCCACCGTTGTAGTGCAAAATAATATTCCCAAGGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGACCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCTGTTGTTCCAGGCTTGAAAAGGATGGATAAGGCTTCTATCATCAAAAATACTATCGAATATGTGAAATGTCTTCAGAAGAGTGTAAAAGATTTAGAGGAGCAGACCAAGCAAAGAAAAACAGAATCCGTGGCATGCTTCAAAAACGACAAAGCCGTTGCTGATGACTCTGAACCTACGAAGAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAAGATCTACTCATCAGAGTTATGTGTGA 699 0.3791 MDDCPLFNEYHYMMNSFEEELMINGEISVQSELSLEGQSSNSNFTTQNIHVAAAGNNNTMNNSLSEEKTDFSLKQHASSECLEESTVVVQNNIPKETHEKHYDDEQSKENQEELQNRKSKRCRNSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKNTIEYVKCLQKSVKDLEEQTKQRKTESVACFKNDKAVADDSEPTKKRFPIVEARVSAKRSTHQSYV. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10231 232 Coils Coil 165 192 - -
Seca4g10231 232 PANTHER BHLH TRANSCRIPTION FACTOR 18 224 - -
Seca4g10231 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 192 IPR036638 GO:0046983
Seca4g10231 232 MobiDBLite consensus disorder prediction 94 127 - -
Seca4g10231 232 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Seca4g10231 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Seca4g10231 232 MobiDBLite consensus disorder prediction 84 127 - -
Seca4g10231 232 Gene3D - 123 196 IPR036638 GO:0046983
Seca4g10231 232 SMART finulus 132 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10231 Seca-Chr4 237121303 237125780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10231 106 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.524 6.93e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10231 HLH 7.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10231 - - gmx:100799087 165.622