Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10228 ATGGCATCAATGGATGAGTCATGGGAAAAATTGCTTTCTGATTTGGAAATGGATGATAGCCATTTACTGAGTGAATACAATGTTGAGGAAGAGTTAAACATCAATGAAGAGAATTCACTCCAATATAATTGGGAAATTCAATCTTGTATTTCAAATTTCACCACTGAAAGTGAAAGCACCTTCGTTGCTGTAGCCAATAGCAACACTATGGAGGACAATTCATCTTTGGAAGAGAACACTGATTTTGGTCTCAAACATGTTGCTGCTTATGCAGAGGAACCAACTCTGTTCTCGTCTTCAATGTCTTATACTCTGTCTTTTGAGCAATCCATTGCAGTGCCGAATAAAGAAACATGCCAAAAACATGATGATGAACAATCAAAGGAGATCCGAGAGGAACTACGTAATAGAAAATCAAAGAGGTGTAGAAGCTCTTCTCAGACACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTGTTCATTGAACTTTCAGCCATTATTCCTGGATTGAAAAAGATAGATAAGGTTTCTATCGTCAACAACACTATCAATTATGTGAAATATCTTCAAAAGAGTGTAAAAGATTTAGAGGAGCAGAACATGAAAAGAAAGACCGAATCCGTCGCATGCTTCAAAAACGACAAATCTAGTGTTGTCGTTGCTGATGACTCTGAACCTACGAAGAAGAGATTCCCCATTGTTGAAGCAAGAGTCTCAGCAAAAGATCTACTCATCAGAGTTATGTGTGAGAATCGAAAGGGCATTGTAATTAAACTATTGACCAAGCTTGAAGCTCATAATCTCTCTGTACTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTGAACATTGACATCATTGCTCAGGTGGACCACGAAGGATTCAGCATGACAATGGACGACCTAGTGGAAAATGTGATCAAGGATTTGTTGGGGGTGTTGTAA 966 0.383 MASMDESWEKLLSDLEMDDSHLLSEYNVEEELNINEENSLQYNWEIQSCISNFTTESESTFVAVANSNTMEDNSSLEENTDFGLKHVAAYAEEPTLFSSSMSYTLSFEQSIAVPNKETCQKHDDEQSKEIREELRNRKSKRCRSSSQTQDHIIAERKRRENLTKLFIELSAIIPGLKKIDKVSIVNNTINYVKYLQKSVKDLEEQNMKRKTESVACFKNDKSSVVVADDSEPTKKRFPIVEARVSAKDLLIRVMCENRKGIVIKLLTKLEAHNLSVLCSNVLPFGNSTLNIDIIAQVDHEGFSMTMDDLVENVIKDLLGVL. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10228 321 PANTHER BHLH TRANSCRIPTION FACTOR 22 315 - -
Seca4g10228 321 Gene3D - 143 217 IPR036638 GO:0046983
Seca4g10228 321 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Seca4g10228 321 ProSiteProfiles ACT domain profile. 250 321 IPR002912 -
Seca4g10228 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 211 IPR036638 GO:0046983
Seca4g10228 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Seca4g10228 321 SMART finulus 152 201 IPR011598 GO:0046983
Seca4g10228 321 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10228 Seca-Chr4 237051108 237054350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10228 131 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 45.729 3.51e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10228 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10228 - - gmx:100799087 271.937