Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10227 ATGGCATCAATGGATGAGTCATGGGAAATTTTGCTTTCTGATTTGGAAATGGATGATTGTCCTTTATTCAATGAATACCATTACATGATGAACTCTTTTGAGGAAGAGTTAATGATCAATGGAGAGATTTCACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATTTCACTACTCAAAACATCCATGTTGCTGCTGCAGGCAATAACAACACTATGAACAATTCACTTTCGGAAGAGAAGACTGACTTTAGTCTCAAACAACATGCTTCCTCGGAGTGTTTAGAGGAATCCACCGTTGTAGTGCAAAATATTATTCCCAAGGAAACACACGAAAAACATTATGATGATGAACAATCAAAGGAGAACCAAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAATTATTCATAGCACTTTCAGCGGTTGTTCCTGGCTTGAAAAGGATGGACAAGGCTTCTATAATCAAGAAGGCTATCGATTATGTGAAATGTCTTCAGAATCGAGTAAAAGATTTAGAAGAGCAAAGCAAGAAAAGAAAGACAGAATCTATGGTATGTTTCAAGGACGACAAATCTAATAGGGTTGTTGCCGTTGCTGACGACCCTGAAGCTATGAAGAGATTCCCCAATATTGAAGCAAGGGTCTCAGCAAAAGATGTACTCATCATAATAATGTGTGAGAAACAAAAGGACATTGCACTCAAACTACTGGCCAAGCTTCAAGCTCATAATCTCTCTGTGGTTTGTAGCAATGTTTTGCCATTTGGAAATTCTACTCTAAACATTATTACCATCGTTGCTCAGACTTCACTTCACGGGCAATCATTTGGAACACTTGTGTCTGTTACACCACAAATTTATTCCACCATTTGGTGTCTGGGTGCTTCTGGTGAACATATGTGTGACAGAGGCGAGGCTGGGAGCGACGACGCCGCAACAAAGACACGACGGTGGTCGTTTTTTGAGCGATGGGTGAGCTGCATTGCGGGTTGGAGGTTTGGGGGCTTGTGTCTCAGAGCTGCGACGGCCGGTGAACGAAGTTTGGGTGGAGCACCTGCAACGATGGATGAGTTGCGCCCATGCCTCCTTCAATGA 1173 0.4169 MASMDESWEILLSDLEMDDCPLFNEYHYMMNSFEEELMINGEISLQSELSLEGQSSNSNFTTQNIHVAAAGNNNTMNNSLSEEKTDFSLKQHASSECLEESTVVVQNIIPKETHEKHYDDEQSKENQEELQNRKSKRCRNSSQIQDHIIAERKRRENLTKLFIALSAVVPGLKRMDKASIIKKAIDYVKCLQNRVKDLEEQSKKRKTESMVCFKDDKSNRVVAVADDPEAMKRFPNIEARVSAKDVLIIIMCEKQKDIALKLLAKLQAHNLSVVCSNVLPFGNSTLNIITIVAQTSLHGQSFGTLVSVTPQIYSTIWCLGASGEHMCDRGEAGSDDAATKTRRWSFFERWVSCIAGWRFGGLCLRAATAGERSLGGAPATMDELRPCLLQ. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10227 390 Coils Coil 181 208 - -
Seca4g10227 390 SMART finulus 148 197 IPR011598 GO:0046983
Seca4g10227 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Seca4g10227 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 207 IPR036638 GO:0046983
Seca4g10227 390 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Seca4g10227 390 MobiDBLite consensus disorder prediction 112 143 - -
Seca4g10227 390 PANTHER BHLH TRANSCRIPTION FACTOR 23 296 - -
Seca4g10227 390 Gene3D - 138 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10227 Seca-Chr4 237010924 237017702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10227 122 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.902 5.81e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10227 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10227 - - gmx:100799087 237.269