Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10226 ATGGATGAATCATGGGAAAAATGGCTTTTTGATATGGAAATGGATGATTTGCATTTATTCAATGAATACAACAACATGAATTCTTTTGAGGAAGAGTTAATCATCAATGGAGAGAATTTACTACAATCAGAACTATCTTTGGAAGGCCAATCTTCCAATTCAAATGTCATTACTGAAAACACCCATGTTGCTGTGGCAGCTGCCAATAACAATACTATGAACAATTCATCTTTGCAAGAGAACACTGGAGATTGTAGTCTCAACCAATATGCTTCCTCGGAGGAACCTTTATTGTTGTCCCCAATGTCCCAGAGTTTAGAGGAATGTTCCACTGTTGTAGCGCCAAATAATATTCCCAAGGAAACACAAGAAAAACATGATGATCAACATTCAAAGGAGAATCGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAACTCTTCTCAGATACAAGATCACATTATCGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAAATGTTCATAGCACTCTCAGCGGTTATTCCTGGCTTGAAAAAGATGGACAAGGCTTCTATCATTAAGGACGCCATTAATTATGTGAAATATCTTCAGAAGACTGTAAAAGATTTACAGGAACAGAACATGAAAAGAAAGAATATGGAATCTGTGGTATGCTTAAGAAACGACAAATCCAACATTGTAACTGTTGCTGACAACTATCAACCTATGAATAGATCCCCCATTATTGAAGTAAGGATCTTAGCAAAAGATATATTCATCAGAGTTGTGTGTGAGAATCGAAAGAACGTTCTAGTCAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTCTGTAGTTTGTAGCAATACTATACCATTTGGGAATTCTATTCTAAACATTACCATCACTGCTCGGGTGGACCATGATTTCAGCATGACAAAGGACGAGCTAGTGAAAAAATTGATGGAGGATTTGTTGGAGACTCATGATTAA 981 0.371 MDESWEKWLFDMEMDDLHLFNEYNNMNSFEEELIINGENLLQSELSLEGQSSNSNVITENTHVAVAAANNNTMNNSSLQENTGDCSLNQYASSEEPLLLSPMSQSLEECSTVVAPNNIPKETQEKHDDQHSKENREELQNRKSKRCRNSSQIQDHIIAERKRRENLTKMFIALSAVIPGLKKMDKASIIKDAINYVKYLQKTVKDLQEQNMKRKNMESVVCLRNDKSNIVTVADNYQPMNRSPIIEVRILAKDIFIRVVCENRKNVLVKLLAKLEAHNLSVVCSNTIPFGNSILNITITARVDHDFSMTKDELVKKLMEDLLETHD. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10226 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Seca4g10226 326 SMART finulus 156 205 IPR011598 GO:0046983
Seca4g10226 326 MobiDBLite consensus disorder prediction 120 151 - -
Seca4g10226 326 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Seca4g10226 326 MobiDBLite consensus disorder prediction 114 151 - -
Seca4g10226 326 Gene3D - 136 215 IPR036638 GO:0046983
Seca4g10226 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 213 IPR036638 GO:0046983
Seca4g10226 326 ProSiteProfiles ACT domain profile. 255 326 IPR002912 -
Seca4g10226 326 PANTHER BHLH TRANSCRIPTION FACTOR 23 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10226 Seca-Chr4 236938096 236941984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10226 119 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.148 3.81e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10226 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10226 - - gmx:100799087 264.233