Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10225 ATGGATGAGTCATGGGAAAAATGGCTTTTTGATATGGAAATGGATGATTGCCATTTATTCAATGAATATAACAACATGAGCTCTTTTGAGGAAGAGTTAATTAGCAATGGAGAGAACACCCATGTTGCTACCGCAGGCAATAACAACACTATGAACAATTCATCTTTGGAAGAGAACACTGCAGGTTTTAGTCTCAAACAACATGCTTCCTCGGAGGAACAACCTTTACTCTCGTCCTCAATGTCCCACACTCTGTCTTTAGAGGAATGTTCCACTGTTGTACCGCCAAATAATATTCCCAAGGAAACACGTGAAAAACGTGATGAACAATCAAAGGAGAACCGAGAGGAACTACAAAATAGAAAATCCAAGAGGTGTAGAAGCTCTTCTCAGATACAAGATCACATTATTGCTGAGAGAAAGAGAAGAGAGAATCTCACCAAAATGTTCATAGCACTTTCAGCGGTTATTCCTGGCTTGAAAAAGATGGACAAGGCATCTATCGTTAACAACGCGATCAATTATGTGAAATATCTTCAGAAGAGTGTGAAAGATTTAGAGGAAGAGAACAAGAAAAGAAAGGTAGAATCGGTGGTATGCTTGAAAAACGACAAATCCTCCAATATTGAAGCTACGAAGAGATTTCCCATTGTTGAAGCAAGGGTCTTAGCAAAAGATGTATTCATTAGAGTTGTGTGTGAGCATCGAGAGGACATTGCAGTCAAGCTACTGGCCAAGCTTGAAGCGCATAATCTCTCTTTAGTTTGTAGCAATGTTTTGCCATTTGGGAATTCTACTCTAAACATTACCATCACTGCTCAGGTATATATATGTGTGTGTACTATATGTGTTTCTTTCTCACCCTTATACCAACATTATATATTAATGTAG 891 0.385 MDESWEKWLFDMEMDDCHLFNEYNNMSSFEEELISNGENTHVATAGNNNTMNNSSLEENTAGFSLKQHASSEEQPLLSSSMSHTLSLEECSTVVPPNNIPKETREKRDEQSKENREELQNRKSKRCRSSSQIQDHIIAERKRRENLTKMFIALSAVIPGLKKMDKASIVNNAINYVKYLQKSVKDLEEENKKRKVESVVCLKNDKSSNIEATKRFPIVEARVLAKDVFIRVVCEHREDIAVKLLAKLEAHNLSLVCSNVLPFGNSTLNITITAQVYICVCTICVSFSPLYQHYILM. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10225 296 PANTHER BHLH TRANSCRIPTION FACTOR 14 275 - -
Seca4g10225 296 Coils Coil 169 196 - -
Seca4g10225 296 Coils Coil 101 121 - -
Seca4g10225 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Seca4g10225 296 Pfam Helix-loop-helix DNA-binding domain 134 180 IPR011598 GO:0046983
Seca4g10225 296 MobiDBLite consensus disorder prediction 63 82 - -
Seca4g10225 296 SMART finulus 136 185 IPR011598 GO:0046983
Seca4g10225 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 195 IPR036638 GO:0046983
Seca4g10225 296 MobiDBLite consensus disorder prediction 87 136 - -
Seca4g10225 296 MobiDBLite consensus disorder prediction 100 136 - -
Seca4g10225 296 Gene3D - 128 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10225 Seca-Chr4 236871393 236877389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10225 82 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 42.202 4.08e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10225 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10225 - - gmx:100815351 254.218