Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10224 ATGCAGCTCACTCACCTCTGCATCATTCTCCCCTCAGATTTTGATGAAAAAGAGAAACTTGATCATGAAACTCCACAAGCCATACAAAAAGTTAAGGCTAAAAAACATCCTCAAGGGGCATGTGGAGGACAAGTTATTGCCTTTTTACATGAATCTTTGAGTAGGTTGCATGATTCAAAGTGGTGGAGCCTATGCAAAAATGGAGAAAGAAGAACCAAGAAGAAGAATTATGGTGGTGGTGTGTTTCGTGACATGGATGGTGTTCAACTCACTGCCAAGATTGGAAGGGACAATCCAAGGATTTTCAGCTATGCTGAGCTTTATATAGGTTCAAGGGGTTTCTCTGAAGATGAAGTTCTTGGTAGTGGAGGTTTTGGTAAAGTGTATAAGGCTGTTTTGCCTAGTGATGGAACAGTTGTTGCTGTGAAATGCTGCTTAGCAGGGAAAGGCCAACAATTTGAGAAGACTTTTGCTGCAGAATTAGCAGCAGTTGCTCATCTTCGCCACAAGAATCTTGTTCCATTGAGGGGTTGGTGTGTTTTTGAAAATCAACTTTATCTTGTTTATGATTACATGCCTAACCGCAGCCTTGATAGAGTCCTATTTCGTAGGCCTGAGAATTTGAAACAAGAGCCTCTTGGTTGGGTAAGGCGTGGGAAAATTGTGAAAGGTTTGGCAAATGCATTGTATTATCTGCATGAACAATTGGAGGCTCAAATAATTCATAGGGATGTTAAGACCAGCAATGTAATGCTTGATTCCTATTATAATGCTCGTTTGGGTGATTTTGGTTTGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGATGAACCAAGGAAGGCTTCAACTTCAACCAAATTTGACCATTTCAGGTTGGCTGAGACAACAAGGATTGGTGGCACAATTGGGTACTTACCCCCTGAAAGCTTCCAGAAAAGAAGCATTGCTACTTCCAAATCTGATGTCTTCAGCTTTGGGATTGTTGTGTTAGAATTGGTGTCTGGAAGGAGAGCTATAGATCTTACATACCCTGATGACCAAATCATTTTGCTTGATTGGGTTAGAAGGCTATCTGATGAAGGGAAGCTTGTTGATGCAGGGGATACAAGGCTACTAGATGGTTCCTACAAGATTTTTGATATGGAACATTTGGTTCACATAGGTCTTTTATGCACACTCCATGATCCACAATTGAGACCAAGCATGAAATGGATTGTGGAAGCACTTTCTGATATTTCAAGCAAATTGCCAGCACTCCCTTCATTTCATTCCCATCCTATGTACATTTCTTTGTCTTCCTCATCTGAGACTAGTCCAATCAGCACAAGAGGCACTGACTCTGGCTCCAACACACACAGTGCTAGTGCTAGCAATCATGCTACTTCCAAATATGTCACAGCCAAAGCAGAGACCTTATATGTAACTGCTGAAGCTGAACAAAACAGAAACAATGGAATCAACTCTTCTAAGAGTAAGAGCATGCATCACCAGCCATCATTTCCTATGATTGAAACTCCCAGGGAGATACCATACAAGGAGATTGTTTCAGCCACAGATAACTTCTCAGAGGAAAGAAGAGTGGCAGAGCTTGACTTTGGAACTGCTTACTATGGCATCCTTGATGATCACTACCATGTCATGGTGAAACGCCTTGGCATGAAAACATGTCCTGCATTACGCCATAGATTCTCCAATGAACTAAGGAATTTGGCAAGACTTCACCACAGGAATTTGGTGCAACTTAGAGGATGGTGCACTGAACAAGGAGAGATGCTTGTGGTTTATGATTACTCTGCAAGACTAATTCTGAGTCACCAAATTCACCACCATAACCATGGTAGAAATGGGAATTCTGTCCTCAAATGGCATCATAGATACAACATAGTGAAATCACTTGCTTCAGCACTTCTCTATCTGCATGAGGAATGGGATGAACAAGTCATTCATAGGAACATAACCTCTTCAGCAGTCATTCTTGAACCTGATATGAACCCAAGACTAGGTAGTTTTGCTCTAGCTGAATTTTTGTCAAGAAATGAGCATGGTCATCATGTAATCACTGATAGAAGCAAATCAGTTTGTGGGATTTTCGGCTACATGTCACCGGAATATGTGGATTCTGGTGATGCAACTGCTGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTATCAGTGGACATATGGCTGTGGATTTTAGGCAACCAGAAGTGCTATTGGTGAAGAAAGTTCATGAATTTGTGATGAGAAACAGACCATTGGAGCAATTAGCAGATATAGCACTCAATGGAGAGTACAATTACAAAGAATTGATGAGATTGGTGAGATTAGGAATTGCATGTACCCGTTCTGACCCAAAATTAAGACCAAGCACAAGACAAATTGTGAGCATTCTTGATGGCAATGACAAATTAATCATGGAGGAGAACATGGAAAGCAGGGAAGAATGGAGACAAAGAAATGCTTGTTCTATGTCATTGGTTAAGAGAATTCAAGCTCTAGGAATACAGTAA 2520 0.4115 MQLTHLCIILPSDFDEKEKLDHETPQAIQKVKAKKHPQGACGGQVIAFLHESLSRLHDSKWWSLCKNGERRTKKKNYGGGVFRDMDGVQLTAKIGRDNPRIFSYAELYIGSRGFSEDEVLGSGGFGKVYKAVLPSDGTVVAVKCCLAGKGQQFEKTFAAELAAVAHLRHKNLVPLRGWCVFENQLYLVYDYMPNRSLDRVLFRRPENLKQEPLGWVRRGKIVKGLANALYYLHEQLEAQIIHRDVKTSNVMLDSYYNARLGDFGLARWLEHELEYDEPRKASTSTKFDHFRLAETTRIGGTIGYLPPESFQKRSIATSKSDVFSFGIVVLELVSGRRAIDLTYPDDQIILLDWVRRLSDEGKLVDAGDTRLLDGSYKIFDMEHLVHIGLLCTLHDPQLRPSMKWIVEALSDISSKLPALPSFHSHPMYISLSSSSETSPISTRGTDSGSNTHSASASNHATSKYVTAKAETLYVTAEAEQNRNNGINSSKSKSMHHQPSFPMIETPREIPYKEIVSATDNFSEERRVAELDFGTAYYGILDDHYHVMVKRLGMKTCPALRHRFSNELRNLARLHHRNLVQLRGWCTEQGEMLVVYDYSARLILSHQIHHHNHGRNGNSVLKWHHRYNIVKSLASALLYLHEEWDEQVIHRNITSSAVILEPDMNPRLGSFALAEFLSRNEHGHHVITDRSKSVCGIFGYMSPEYVDSGDATAAADVYSFGVVVLEVISGHMAVDFRQPEVLLVKKVHEFVMRNRPLEQLADIALNGEYNYKELMRLVRLGIACTRSDPKLRPSTRQIVSILDGNDKLIMEENMESREEWRQRNACSMSLVKRIQALGIQ. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10224 839 Gene3D Transferase(Phosphotransferase) domain 1 603 827 - -
Seca4g10224 839 PANTHER - 75 411 - -
Seca4g10224 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Seca4g10224 839 SUPERFAMILY Protein kinase-like (PK-like) 494 801 IPR011009 -
Seca4g10224 839 ProSiteProfiles Protein kinase domain profile. 114 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10224 839 MobiDBLite consensus disorder prediction 478 498 - -
Seca4g10224 839 Gene3D Phosphorylase Kinase; domain 1 87 191 - -
Seca4g10224 839 Pfam Protein kinase domain 115 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10224 839 FunFam Receptor like protein kinase S.2 599 824 - -
Seca4g10224 839 SUPERFAMILY Protein kinase-like (PK-like) 98 440 IPR011009 -
Seca4g10224 839 MobiDBLite consensus disorder prediction 478 501 - -
Seca4g10224 839 Gene3D Transferase(Phosphotransferase) domain 1 192 416 - -
Seca4g10224 839 FunFam Receptor like protein kinase S.2 480 597 - -
Seca4g10224 839 Gene3D Phosphorylase Kinase; domain 1 480 597 - -
Seca4g10224 839 SMART serkin_6 521 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10224 839 SMART serkin_6 114 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10224 839 ProSiteProfiles Protein kinase domain profile. 521 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10224 839 FunFam Receptor like protein kinase S.2 88 191 - -
Seca4g10224 839 MobiDBLite consensus disorder prediction 433 459 - -
Seca4g10224 839 FunFam Receptor like protein kinase S.2 192 415 - -
Seca4g10224 839 Pfam Protein tyrosine and serine/threonine kinase 525 800 IPR001245 GO:0004672|GO:0006468
Seca4g10224 839 ProSitePatterns Protein kinases ATP-binding region signature. 120 149 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10224 Seca-Chr4 236850598 236853581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10224 511 807 Receptor kinase-like Gene Family AT3G53810 36.213 7.87e-52 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca4g10224 PK_Tyr_Ser-Thr 3.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10224 - - gmx:100781955 1357.43