Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10222 ATGTCCTTCAATCAATCAAAGTCCGACAAGAACGACGCCGTTTACCGAAAATCCGGGCGATCCGCGAGCTTCAATCAGCAGAGAGGTTCCTCAGGCGCCTACGGCAAGGGTGGTGGCGGTGGCGGCGGTGGAGGACCCGCGCCGTCGAGCACCTCGGCTTCATCACTCTCCTCTAGCCGGAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGACAATCTAGGGTAAACCCTTCCCCAGTGAACTCGACAGAGTCTAATAGTGCTTCTGCTGCTCGGACCATACATAATGGTACCCATGTACAGCCACAATTACATGGAGCATCTGATGGGCCAGCTACAAAGTCATATGAATCATCTGCTGCACAGAGGAGCACTAGAGTTGTTCCAAAGGCTCCGGCTTCTGAACCGCCCCCCATGAATTCTGATACAGCCGCTCCTGCAAGCCCTGCTAAGGGAGATGCATCAAAGGCATTCCCTTTTCAATTTGGATCAATTATTCCTAGCTATATGAATGGAATGGCAATTCCTGCTCGTACAAGCTCAGCTCCTCCTAATTTAGATGAGCAGAAGCGTGATCAGGTTCGTCACGACTCATATAAATCTGCTGCATCTTCAGTGCCAATACCTCCTGTTCCAAAGCAGCAGCAACCACCTAGGAAAGATGCAGGTGTCACTGAGCAATCTAATGCTGGGGAGACCCATACAGGGACTAAGGCTAAAAAGGATCCTCAGGTGACAGCTTTGACCCCAGCAAACCAGATGCAGAAGCCTTCTGTTCTTCCTGTAACTGGGATTTCAATGGCAACACCATATCACCAGTCACATGCATCTTTACAGTTTGGTGGTCCTAATCCACAGATTCAATCTCAGGGTATGTCAACGACAGCCCTCCAGATGCCTATACCAATGTTACCTATTGGAAATGCTGCACAAGTGCAACAGCCGGTTTTTGTTCCAGGCCTTCAGCCTCATCCGATGCACCCTCAGGGGATCATACATCAAGGCCAAAATGTGGGTTTCACTCCTCAAATGGGTCATCAGTTGTCCCATCAATTAGGCAACATGGGTATTGGCATCAGCCCCCAATATCCCCAGCAGCAAGGGGGGAAATTTGCTGGTCCTCGAAAAACTACTCCTGTGAAGATAACTCATCCTGACACACATGAAGAGCTGAGACTTGATAGGGCAGATGCATATTCAGATGGTGGGTCATCTGGTGCTAGGTCACATCCTAACATACCTTCTCAATCCCAACCCGTTAAATCTTTTGGGGCTTCACATCCTATGAGCTATTATCCATCCAGCTCATACAACACCACTCCTCTCTATTATCCACCTTCTAGCTCTCTTCCATTAACAAGTAGCCAGATAACTCCTAATTCTCAGCCACCATTATTCAATTATCCTGTGAACCGTGGTCCGCAAAATGTGGGTTTCATGAATTCATCATCGCATAGTTCCGTCCCTGTTAATAAAACTAGCCATCCTATTCCTGGCATGGTTGAACCACCTATTCCAGAATCTTCCCATGATGCACCTAATGCAGTGTCATCAGTTCCAACGAGGGTTGCTTCTGTGACTATTAAACCAAGTGGTGTGTCTGCTGTTGTGGACTCATCATTGGCCAATTCCAGTGTTTCTGGTGATCAAAATAGAGAACCTCCTAGTTCAGCAGCATCTTGTGACACTAGCTCCTCTGTGCCACAAAAAGGGTCTGAAACTTCTTTGGTGAAACAATCTGCTGCACCTGTTGTTGTAACTGCTGAGAAGCTTGCTGACACTTCCTTGGTGCTGCCTTCAGCAGCTGTGAGTGAGGATTCTGCCTCAGTTGTGGCTAATAATGAAGACAGAAGGAGGGAATCTCTTAGTAGGTCCAACTCTTTGAAGGATAACCAGAAGAAACTAGGGAAGAAAGGTCAATCATCACAATATCAGGTTTCTGTGCAATCTCCTACAGTGGCTAATATGCCTTCTCAAGCTGTTGACAGTGGTATATCTGATACTGGAGTTTCTGAACCTGTAGGAACTAAAACAAACCATTCTCCGGCAGTTACCACTGGAGATCTTCCTATATCTGACACACTATCTGGTAGCATTTCCAGTGCTGTTGAACTGGAGACAAGTGGGTCTGCAGAAGTATCTGCTTGTGTTTCGGCTGAAGGATATGGTGCTCAAGCTGCTGATAGTTTGGACCATCATAAGCATGATAAGATAGATGAATCATCTGAAGGTAAATTACTAAAGCATTATGATAAAAATTATGAACCATCTCTTGAAGGATACAAAAAAAATATTAAATGTGATGGAACAGAATTTAAACAAACTGAAAAAGACATTGCAAATGTAAGAACTGAGGTATTAACCTTTAAAACAATACATCAAGGACAGGATCAATCTGCAAGTTGTATTGCAGAATGTGACAGGACAGGATATAATTTAGTTACGTCTACCTCTATTGCATTTGATTCTAGAGATGTCTCTTTTAGTAGAAATGATAGTTTAGTTACTAATGACTCTGTTTCTGGAAATTTTGGCACATCAGATCTGCACTCTACTGATCTTCCAGAAACAACTTCAAAGGATATCAATGATAGTTCAGAGAATGCTGGCAGTGACTCAATGTCTCTTTCAGTATCAAATACCAAGGATAGACCAATATTAGAACCAAATAAGGTGAAAACTACATCTAAAGGGAAAAAGAAAAGAAGAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCAACTTCTGATCTTTATAATGCATACAAGGGTCCTGAAGAAAAGAAAGAAGCTGTCTTGATTTCAGAGAGCACAGAAAGTGCTTCGACTTCAGGAAGTTCAATGCAGTTGCCTGCAGATGCTGCTCAGTCAGATGCTATAGCAGGTGAGAAATGTGGACACAGTAAAGCTGAACCTGATGACTGGGAGGATGCTGCTGACATGTCTACTCCAAAACTGGAAGTTGATGATAAATCTCAACAGGTTAATGATGGAAGTGGAGGTACAGCCAAAAAGTATTCTCGCGATTTCCTTTTAAAATTTGCCGAGCAATGTACTGACCTTCCTGAAGGTTTTGTGATCACGGACATAGCTGAGATTTTGATGAGTGCTAACATTAGTAGTCCTCATGCTATGGAGCGTGATTCACATCCAAGTCCTGGAAGAATTGTAGATAGGCCAGGTGGGATGTCTCGGATGGAACGTCGTGGCAGTATCGTGGCTGATGAAGACAGATGGAATAGAGTTTCTAGTGCTTTTCATTCTGGACGAGGTTTGGATGGTATTGGGGGTAATGTGGGATTTCGAACTGGCCAAGGAGGCAATTTTGTTGTTTCAAGGAATCCTCGTGCACAGACACCTGTGCAATATGATCGGGGGATCCTTTCTGGGCCAATGCAATCTGTGGGAAATCAAGGTGGGATGCAACGAAACAGCCCTGATGGGGGGGAGAGGTGGCAGCGTGCTGCTAGCTTCCAGCAGAGGGGTTTAATTCCTTCTCCTACTCCTCAGACTCCCATGCAGATGATGCACAAAGCTGAGAAGAAGTATGAAGTGGGTAAAGTGACAGATGTGGAAGAGGCAAAGCAGCGGCAGTTGAAAGGTATCTTGAACAAGTTAACTCCTCAGAATTTTGATAGACTCTTTGAACAGGTAAAAGCAGTTAATATTGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCTCTGATGGAGCCTACCTTTTGTGAAATGTATGCCAACTTCTGTTCACATCTGGCTTCTGAGTTGCCTGATTTTAGTGAGGACAATGAGAAGATAACCTTTAAAAGGTTATTATTAAATAAGTGTCAGGAGGAATTTGAGAGGGGTGAAAGAGAACAAGAAGAAGCAAATAAGGTTGATGAGGGTGAGGTCAGGCAGTCTAAAGAAGAAAGGGAGGAGAGAAGAGTCAAGGCGAGAAGGCGCATGTTGGGAAACATCCGATTGATCGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGTATCAAGAAGTTACTGGGTCAATATGAGGATCCTGATGAGGAAGATATTGAAGCTTTGTGCAAGCTGATGAGTACTATCGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGCTTATTTTGAAAGGATGAAATTATTATCAAACAACATGAATTTATCTTCTCGGGTGAGGTTTATGTTGAAGGATGTCATTGACTTGAGAAAGAATAAATGGCAACAAAGGAGGAAAGTTGAAGGTCCCAAGAAGATTGAGGAGGTACACAGAGATGCTGCACAAGAGAGGCAGGCTCAAGCTGGTAGGCCGGGTCGTGGTCTGGGCAACAATCAGTCAACCAGAAGGAACCCTGTGGATTTTGGTCCAAGGGGATCATCTATGTTGTCTTCTCCTAATTCTCAGATGGGTGGACTGCGTGGGCTGCCTACTCATGTTCGTGGATATGGTTCTCAGGATGCTCGTTTTGAGGAAAGACAATCTTATGAGGCTAGGACCTTGTCAGTTACCTTGCCTCAAAGACCCTTAGGTGATGATTCTATAACCTTGGGACCCCAAGGTGGTCTTGCTAGGGGAATGTCCATTAGAGGATCAACTGCAATTTCTAATTTGCCAGTATCTGATGTGCATCCTGGCTCTGGAGACTCTCATAGAATGACAACTGGTCTTAATGGTTATAGCAATTTATCAGAGCGTACACCATATAATTCAAGGGAGGATCTTGCATCAAGGTATATTACAGATAGGTTTTCAGGTCCAGCTGCTTATGATCAATCTAGTGCTCCTGATCGTAATATAAACTATGGTAACAGAGACTTGAGGAATGCTCCAGGTCTTGACAGACCTGTTGCAACTTCACCTCCTGCACAATTGCAAGGGTCAACAGTCTCCCAGAATGCTTCATCAGAGGTTTGGACAGAAGAACGACTGCGGGACATGTCCATGTCAGCAATCAAAGAATACTACAGTGCTAGAGATGAGAATGAAATTGCTTTATGCATCAAAGATTTGAACTCTCCAAGTTTTCATCCTTCCATGGTTTCTCTCTGGGTCACGGACTCATTTGAGAGAAAGGACATAGAAAGAGATCTTTTGGCCAAACTGCTTGTCAAGCTTGTGAAATCTCAGGATGGCACCTTGAGTCAAGCTCAACTCATCAAAGGGTTTGAAGCGGTTCTCAATACATTGGAGGATGCTGTTAATGATGCCCCCAGAGCACCAGAGTTTCTTGGCCGTATTTTTGCAAAAGCTATAACAGAGAATGTAGTCACTCTGAATGAGATTGGGCGGTTAATACATGATGGTGGGGAGGAGCCAGGCAGTCTCTTAGAAGTTGGACTTGCAGCTGATGTTCTTGGAAGCACCTTGGAGGTAATAAAAACTGAGAATGGGGACGTAGTTCTCAGTGAGATCCGTACAAGCTCTAACTTGCGGTTGGAGACTTTTCGGCCACCTAATCCTCTTACATCCAAGAAGTTAGAGAAATTTATTTAG 5532 0.4422 MSFNQSKSDKNDAVYRKSGRSASFNQQRGSSGAYGKGGGGGGGGGPAPSSTSASSLSSSRSFNKKSNNAQGGQSRVNPSPVNSTESNSASAARTIHNGTHVQPQLHGASDGPATKSYESSAAQRSTRVVPKAPASEPPPMNSDTAAPASPAKGDASKAFPFQFGSIIPSYMNGMAIPARTSSAPPNLDEQKRDQVRHDSYKSAASSVPIPPVPKQQQPPRKDAGVTEQSNAGETHTGTKAKKDPQVTALTPANQMQKPSVLPVTGISMATPYHQSHASLQFGGPNPQIQSQGMSTTALQMPIPMLPIGNAAQVQQPVFVPGLQPHPMHPQGIIHQGQNVGFTPQMGHQLSHQLGNMGIGISPQYPQQQGGKFAGPRKTTPVKITHPDTHEELRLDRADAYSDGGSSGARSHPNIPSQSQPVKSFGASHPMSYYPSSSYNTTPLYYPPSSSLPLTSSQITPNSQPPLFNYPVNRGPQNVGFMNSSSHSSVPVNKTSHPIPGMVEPPIPESSHDAPNAVSSVPTRVASVTIKPSGVSAVVDSSLANSSVSGDQNREPPSSAASCDTSSSVPQKGSETSLVKQSAAPVVVTAEKLADTSLVLPSAAVSEDSASVVANNEDRRRESLSRSNSLKDNQKKLGKKGQSSQYQVSVQSPTVANMPSQAVDSGISDTGVSEPVGTKTNHSPAVTTGDLPISDTLSGSISSAVELETSGSAEVSACVSAEGYGAQAADSLDHHKHDKIDESSEGKLLKHYDKNYEPSLEGYKKNIKCDGTEFKQTEKDIANVRTEVLTFKTIHQGQDQSASCIAECDRTGYNLVTSTSIAFDSRDVSFSRNDSLVTNDSVSGNFGTSDLHSTDLPETTSKDINDSSENAGSDSMSLSVSNTKDRPILEPNKVKTTSKGKKKRREILQKADAAGSTSDLYNAYKGPEEKKEAVLISESTESASTSGSSMQLPADAAQSDAIAGEKCGHSKAEPDDWEDAADMSTPKLEVDDKSQQVNDGSGGTAKKYSRDFLLKFAEQCTDLPEGFVITDIAEILMSANISSPHAMERDSHPSPGRIVDRPGGMSRMERRGSIVADEDRWNRVSSAFHSGRGLDGIGGNVGFRTGQGGNFVVSRNPRAQTPVQYDRGILSGPMQSVGNQGGMQRNSPDGGERWQRAASFQQRGLIPSPTPQTPMQMMHKAEKKYEVGKVTDVEEAKQRQLKGILNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVDEGEVRQSKEEREERRVKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYEDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSNNMNLSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQAGRPGRGLGNNQSTRRNPVDFGPRGSSMLSSPNSQMGGLRGLPTHVRGYGSQDARFEERQSYEARTLSVTLPQRPLGDDSITLGPQGGLARGMSIRGSTAISNLPVSDVHPGSGDSHRMTTGLNGYSNLSERTPYNSREDLASRYITDRFSGPAAYDQSSAPDRNINYGNRDLRNAPGLDRPVATSPPAQLQGSTVSQNASSEVWTEERLRDMSMSAIKEYYSARDENEIALCIKDLNSPSFHPSMVSLWVTDSFERKDIERDLLAKLLVKLVKSQDGTLSQAQLIKGFEAVLNTLEDAVNDAPRAPEFLGRIFAKAITENVVTLNEIGRLIHDGGEEPGSLLEVGLAADVLGSTLEVIKTENGDVVLSEIRTSSNLRLETFRPPNPLTSKKLEKFI. 1844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10222 1843 Pfam MIF4G domain 1197 1419 IPR003890 GO:0003723|GO:0005515
Seca4g10222 1843 MobiDBLite consensus disorder prediction 47 104 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 177 259 - -
Seca4g10222 1843 ProSiteProfiles MI domain profile. 1655 1779 IPR003891 -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1 157 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1548 1580 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1289 1314 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 936 954 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1423 1484 - -
Seca4g10222 1843 SMART if4_15 1197 1419 IPR003890 GO:0003723|GO:0005515
Seca4g10222 1843 Gene3D - 1648 1843 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 935 978 - -
Seca4g10222 1843 SUPERFAMILY ARM repeat 1193 1421 IPR016024 -
Seca4g10222 1843 Pfam MA3 domain 1658 1768 IPR003891 -
Seca4g10222 1843 SMART ma3_7 1656 1770 IPR003891 -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1451 1484 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 838 912 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1127 1151 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1044 1064 - -
Seca4g10222 1843 Coils Coil 1279 1299 - -
Seca4g10222 1843 Gene3D - 1197 1432 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1598 1649 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1423 1443 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 221 259 - -
Seca4g10222 1843 SUPERFAMILY ARM repeat 1651 1838 IPR016024 -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 603 693 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 638 693 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 18 32 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1633 1649 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 1563 1580 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 544 581 - -
Seca4g10222 1843 FunFam Eukaryotic translation initiation factor 4G 1197 1432 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 366 427 - -
Seca4g10222 1843 FunFam Eukaryotic translation initiation factor 4G 1649 1842 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 612 637 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 406 427 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 838 885 - -
Seca4g10222 1843 MobiDBLite consensus disorder prediction 382 398 - -
Seca4g10222 1843 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 358 1843 IPR045208 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10222 Seca-Chr4 236801079 236810748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10222 1 1842 Eukaryotic Initiation Factors Gene Family AT3G60240 43.188 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10222 K03260 - gmx:100796636 2352.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10222 4 236801079 236810748 Seca4g10222 4 236801079 236810748 ECH