Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10220 ATGTTGAAGGCAATGGTTAATCTGATAGTTGACTCCACAAATATAACACTAAAATCTTGGGAGACTAAACTAGAAAGTGAGGGAGTAGTTTCAGAGATTAAAGTTGATGATGATCTGAGAGGCTTGTCAGCTGACATAATTTCCAGAGCTTGTTTTGGGAGCAATTATATTGAAGGAAAAGAAATATTCACAAAGCTTAGAGATCTTCAAAAACTCCTTTCTAAGATATATGCTGGAATTCCAGGCTTTAGATACTTGCCAAACAAAAGCAACAGACAGATGTGGAGATTACAGAAAGAGATAAACTCAAAGATATCAAAGCTCATAAAACAACGCATGGAGGAATCTCGTGAGGAGGATCTCTTGCAAATGATACTTGAGGGTGCAAAGAACTGTGAGGATAGTGATGGCCTCTTATCAAATTCCATCTCACGAGACACCTTCATGATAGATAACTGCAAAAATATATTCTTTGCTGGACATGAGACTACTGCAATTACAGCATCATGGTGCCTGATGCTGTTAGCTACACACCAAGATTGGCAAGATCGTGCTCGTGCTGAGGTGCTTGAAGTTTGTGGAAATGGTGATCTAGATGCAAGTATGCTTAGAAGCATGAAAACGTTAACCATGGTGATTCAAGAGACTTTGAGGCTTTATCCACCAGCAGCATTTGTTGTCAGAAAAACTTTCCAAGATTTTAATTTAAAAGGTATCCTAATTCCAAAAGGAATGAATATTCAGATTCCAATCACAGTGCTGCAGCATGACCCTGAGCTCTGGGGGCCTGATGTCCACAAGTTCAATCCAGAAAGATTTGCAAATGGAGTGCTTGGTGCCTGCAAGATTCCACAAGCTTATATGCCATTTGGAATAGGGGCTCGTGTCTGTGTTGGACAACATTTAGCCATGACAGAACTGAAGGTGATTTTATCTCTCATTCTGTTGAAGTTTCGGTTCTCTCTCTCATCAAGTTACTGCCATTCACCTGCCTTCCATTTGGTTATAGAACCTGGCCAGGGAGTTGTTCTCAATATGACCAGAATTTAA 1050 0.4 MLKAMVNLIVDSTNITLKSWETKLESEGVVSEIKVDDDLRGLSADIISRACFGSNYIEGKEIFTKLRDLQKLLSKIYAGIPGFRYLPNKSNRQMWRLQKEINSKISKLIKQRMEESREEDLLQMILEGAKNCEDSDGLLSNSISRDTFMIDNCKNIFFAGHETTAITASWCLMLLATHQDWQDRARAEVLEVCGNGDLDASMLRSMKTLTMVIQETLRLYPPAAFVVRKTFQDFNLKGILIPKGMNIQIPITVLQHDPELWGPDVHKFNPERFANGVLGACKIPQAYMPFGIGARVCVGQHLAMTELKVILSLILLKFRFSLSSSYCHSPAFHLVIEPGQGVVLNMTRI. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10220 349 Gene3D Cytochrome P450 1 349 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS P450 superfamily signature 288 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS P450 superfamily signature 211 222 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS P450 superfamily signature 159 176 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS P450 superfamily signature 297 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 290 299 IPR017972 GO:0005506|GO:0016705
Seca4g10220 349 SUPERFAMILY Cytochrome P450 2 347 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 Pfam Cytochrome P450 4 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PANTHER CYTOCHROME P450 FAMILY MEMBER 2 340 - -
Seca4g10220 349 PRINTS E-class P450 group I signature 297 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS E-class P450 group I signature 168 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS E-class P450 group I signature 42 60 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS E-class P450 group I signature 148 165 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g10220 349 PRINTS E-class P450 group I signature 287 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10220 Seca-Chr4 236790828 236793566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10220 2 346 Cytochrome P450 AT5G24900 44.101 3.34e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10220 K24544 - gmx:100780335 612.838