Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10216 ATGCGATGTTGTTGTGTGCAGACCAAGAGAACAAAGAAGGCCGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTCTAAGGAAGCAAATTAAGAAGATGGAGGTCAGTCAGCACAGTAAGTTCTTCTGTGAGTTCTGTGGAAAGTATGCTGTTAAGAGGAAGGCTGTTGGTATTTGGGGATGCAAAGATTGTGGCAAGGTGAAAGCTGGAGGTGCTTACACATTGAATACTGCCAGTGCTGTAACTGTGCGAAGCACCATCCGGAGGCTGAGAGAGCAGACCGAGAGTTAA 297 0.4714 MRCCCVQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10216 98 Pfam Ribosomal L37ae protein family 10 94 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca4g10216 98 PANTHER ZGC:171772 6 98 - -
Seca4g10216 98 NCBIfam ribosomal protein eL43 9 97 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca4g10216 98 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 10 78 IPR002674 GO:0003735|GO:0005840|GO:0006412
Seca4g10216 98 SUPERFAMILY Zn-binding ribosomal proteins 16 88 IPR011332 GO:0006412
Seca4g10216 98 FunFam 60S ribosomal protein L37a 8 98 - -
Seca4g10216 98 Gene3D - 7 98 IPR011331 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10216 Seca-Chr4 236750595 236752155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10216 8 98 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.407 1.65e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10216 K02921 - cit:102618361 191.815