Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10209 ATGCCTCCAAGAACGGTGAAGAGAGGGGCCGGGGCTGGTGGTGCGAAGAGGGGTGGCAGAGGAACCAGGGTGACCCCGAAGGCTGCACAGAACCAGCAGCACCCTGAAGTTGCGGAGGAGAAGCAGGTTATTGAGGAGGAGGAACACAAGGCGGCGGAAGAGAACCCTGTCGTTGAGGAGAAACCTGTTGTTGAAGAGAAACCTGTTGTTGAGGACAAGGCTATTGATATGAACCAAATGGCTCCAGAGGCTGTAGAAGAAGCTACTCATGTGTCTAATGGTTTACCCATGGCGAAAAACGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACGCCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAAGAGTATGTTGGAGTTGATTACGATGAGAAGGAAATTGAACAAGATGAGGTTCATGAGGTGGAAGAGGAGGTAGAAGAAGAAGCTGAAGATAATGTGGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCACGATGAAATTGAGGGTGAGGAAGATGATGAGCATGCTGGTGAGGAGCATGAGCATGTGGAGTTGGCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAACGGAAAGAATTTGAAGTATTTGTTGGAGGCCTAGACAAGGATGCTACTGAAGGTGATCTGAGAAAGGTTTTCAGTGAAGTTGGGGTTGTTACTGAGGTCAGATTGATGATGAACCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTATGGAACAAGCAAAACGAGCTGTATCAGAGCTCAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACTTTGGTAGAAGATAGTAATGATGAAGGAATGAACCGTGGATTTGCATTTTTGGAATTTTCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCAGGGGATGAAATAATGTCACAGGTTAAAACTGTATTTATTGATGCACTGCCTCCTTCATGGGATGAAGATTATGTTCGGGATATTCTTAAGAAATTTGGGGAGATTGAAAAGGTTGAACTTGCCAGGAATATGCCAGCTGCTCGCAGGAAGGACTATGGATTTGTTACCTTTGGCACACATGATGCTGCTGTAAGATGTGCTGAAAGCATTACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAAGTAAGGGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATGTTAGTCGTGGGGACTATCGTTCTGGTCGTGGATCTGGACTAATGACAAGGTCTTCATGGAGCCGACCTGCACCACGTAGCTTTCCTTCCCGTGGGGTAAGAGGAATTGTGAGTCGTGTTCCACCAGCCAGGCCTGTTAGTGTGAGAGATAGACGCCCTGTCATGTCCATGCCAGTAAGAAGTAGGCCACTGGCTCCTCCAGCTAGATCTTATGATAGGAGACCGGCTGCTCCTGCATATCCAAAAAGTAGTGTGAAGAGAGATTATGGTCGGCGCGAGGATCTGCCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGTACATCTTACAGGGATTATCCAGCACGTGGTCCTGGCTATTCTGAGCTCCCTAGAAGTACATCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATAGCCAAAGATTTGAGAGGCCTCCTCCTCCACCCCCTCCTCCCCATGTAAGTTACCGAGAAGGTCGCCCCCGTGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATGGATGATGTTCCTCCGCGATACGCGGATGCTGGTGTTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTGGTAGTGCCTCACAGTATGGGGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTTGGATATGGTGGTGGCAGCAGAAGTTCTATTTCTAGTCAAGATTCGCATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGTGGAGGCTCTTTTGGTGGTAGTGATGTTGGTGGCATGTACTCATCAAGTTACAGTGGTGGTGGTGATTACATTTCTCGTGGAAGTGATGTAATGTTCATGGCCTTTTTCAATCTCAAGTTGGTGGCAGCTCGTATTCATCAATGTATTCTGGCAGGGGTGTGGGTGGTAGTAGCAGTTACATGGGTAGTGGTGGATCAGGATCTTATTATTGAGATCTGA 2457 0.4636 MPPRTVKRGAGAGGAKRGGRGTRVTPKAAQNQQHPEVAEEKQVIEEEEHKAAEENPVVEEKPVVEEKPVVEDKAIDMNQMAPEAVEEATHVSNGLPMAKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYVGVDYDEKEIEQDEVHEVEEEVEEEAEDNVGEEEGDTGEEEVEDVHDEIEGEEDDEHAGEEHEHVELADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEGDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETMEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDSNDEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRDILKKFGEIEKVELARNMPAARRKDYGFVTFGTHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRSGRGSGLMTRSSWSRPAPRSFPSRGVRGIVSRVPPARPVSVRDRRPVMSMPVRSRPLAPPARSYDRRPAAPAYPKSSVKRDYGRREDLPPPRSRVAADYGSRVASERRTSYRDYPARGPGYSELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPPHVSYREGRPRDYDALSGSKRSYAAMDDVPPRYADAGVRQSRARLEYDYGGSASQYGDAYGDRLGRSSLGYGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGGSDVGGMYSSSYSGGGDYISRGSDVMFMAFFNLKLVAARIHQCILAGVWVVVAVTWVVVDQDLIIEI. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10209 818 CDD RRM_SF 222 293 - -
Seca4g10209 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 384 IPR000504 GO:0003723
Seca4g10209 818 MobiDBLite consensus disorder prediction 1 207 - -
Seca4g10209 818 CDD RRM_SF 399 473 - -
Seca4g10209 818 Coils Coil 137 160 - -
Seca4g10209 818 SUPERFAMILY RNA-binding domain, RBD 298 464 IPR035979 GO:0003676
Seca4g10209 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Seca4g10209 818 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 151 300 - -
Seca4g10209 818 FunFam Heterogeneous nuclear ribonucleoprotein Q 301 383 - -
Seca4g10209 818 Gene3D - 301 383 IPR012677 -
Seca4g10209 818 MobiDBLite consensus disorder prediction 114 189 - -
Seca4g10209 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 397 479 IPR000504 GO:0003723
Seca4g10209 818 Gene3D - 131 300 IPR012677 -
Seca4g10209 818 CDD RRM_SF 302 369 - -
Seca4g10209 818 MobiDBLite consensus disorder prediction 97 113 - -
Seca4g10209 818 Gene3D - 389 505 IPR012677 -
Seca4g10209 818 MobiDBLite consensus disorder prediction 572 586 - -
Seca4g10209 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 368 IPR000504 GO:0003723
Seca4g10209 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 399 464 IPR000504 GO:0003723
Seca4g10209 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 290 IPR000504 GO:0003723
Seca4g10209 818 MobiDBLite consensus disorder prediction 190 207 - -
Seca4g10209 818 MobiDBLite consensus disorder prediction 479 665 - -
Seca4g10209 818 FunFam RNA recognition water-stress protein1 387 508 - -
Seca4g10209 818 SUPERFAMILY RNA-binding domain, RBD 215 298 IPR035979 GO:0003676
Seca4g10209 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 33 730 - -
Seca4g10209 818 Coils Coil 95 118 - -
Seca4g10209 818 SMART rrm1_1 301 380 IPR000504 GO:0003723
Seca4g10209 818 SMART rrm1_1 221 294 IPR000504 GO:0003723
Seca4g10209 818 SMART rrm1_1 398 473 IPR000504 GO:0003723
Seca4g10209 818 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10209 Seca-Chr4 236556865 236563562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10209 215 478 Eukaryotic Initiation Factors Gene Family AT1G49760 24.749 7.16e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10209 - - aprc:113850151 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10209 4 236556865 236563562 Seca4g10209 4 236556865 236563562 ECH