Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10200 ATGTCTTCTTCATCCTCCTCCAATCATCAATGGATCTACGACGTGTTCATCAATTTCAGGGGGGAAGACACTCGTAGGACATTCGTTTCTCATCTCTATGCTTCCCTCTCCAATGCCGGAATCAACGCTTTCATGGACGATAAGAAGCTTGGCAAGGGACTGAGGCTGAAACCAGAACTATTGCGGGCAATTGAAGGCTCTCAGATAGCTCTCGTTGTTCTCTCCAAAAACTATTCTTCATCTTGTTGGTGTCTTAACGAGCTGGACAAAATCATGGAATGCCACATAACATATGGCCAAGTGGTTTTGCCTATATTTTACGATGTTGATCCATCCGATGTGCGTCATCAGAAGGGTGCTTTTGGAAAAGCTTTGGAAGCAACTGCTAAAGAAAGGAATGAAGCTGAACCAGTAAAGAAAATTGTTGAGTTTGTTTTGGAGAAGCTAGACCACACATTCTTGTCTATTACTGAATTTCCGGTTGGGTTGGAATCCCGTGTGCAAGAAGTGATTGCATTTATCCAAAATCAATCAAGCAAAGTTTGTATAATAGGAATCTGGGGAATGGGAGGGTCTGGTAAAACAACCACAGCCAAAGTCATCTACAATAGAATTCATCGCAAATTTGTGGATAGAAGTTTTGTTGAAAATATTCGAGAAGTGTGTGAGAAAGATCGTACCGGCCATATTCATTTACAAGAACAACTTCTTTCAGATGTCCTAAACACAAAGGTGAAGATACATAGTATTGCTCTGGGGAAAAATATGATCGAGAAAAGACTTTGCGGGAAAAGGGTACTCATTGTACTTGATGATGTAAATAAATTTGAGCAATTAAAAGCACTATGTGGAAATCGTAATGTGAAGGAAATGGATAAAAGTGAATCCCTTGAGCTTTTCAGTTGGCATGCTTTTCGAAAAGCTAGCCCAAGAGAAAACTTCAGAGAACTCTCAAGAAACGTAATTGCTTATTGTGGAGGATTGCCGCTAGCTCTTGAAGTTCTTGGATCCTACTTATATGAAAGGACAGAACAAGAATGGAAAAGTGTATTATCCAAACTAGAGAGAATTCCCAATGATCAAGTACAAGAGAAACTGAGAATAAGCTTTGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAGGATAGGGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGGGATTGGAATAGCTGTCCTCATTGAGCGGAGCCTTGTAAAAGTTGAAAGGAATAACAAGCTTCGAATGCATGATTTACTTCGAGACATGGGAAGAGAAATTGTTCGTGAAGGTTCAACAAAAGAGCCTGGGAAGCGTAGCCGATTGTGGTTTCATGAGGATGTACATGATGTTTTGACAAATAATGCTGGAACAGAAACTGTTGAGGGATTGGCTTTGAAGTTGCAAAGAACCGGCAGAGTATGCTTCAGTACTAATGCTTTTAAGGAAATGAAGAAACTGAGACTTTTAAAACTTGATCATGTTGACCTCACTGGAGATTATGGGTATCTTTCCAAGCAACTGAGATTGGTCTGTTGGCAAGGCTTTGCCTTCAAATATATACCCGATGAATTTTATCTGGGAAATGTGGTTGTTATTGACTTAAGATACAGCAATATTAAACAAATTTGGAAGGAAACCAAGTTGCTGGAGAAGCTAAAAATTCTCAATCTCAGTCATTCTAGGTACTTGACAAATACCCCTGACTTTTCAAAACTACCAAATCTAGAAAAGCTCATTCTGAAGGATTGTCCAAGTTTGTCCGAGGTACACCAATCCATTGGAGATCTTAATAATCTTCTTCTGATAAATTTGAAGGACTGTACGAATATTAGCAATCTACCAAGGAAGATCTATGAGTTAAAGTTTTTGAAAACTCTCATTCTTTCTGGTTGTTCAAAGATTGATAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTGATTGCAAAAGATACAGCTGTAAAAGAAGTGCCCTATTCAATAATAAGGTCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCATGGGATGTTTTCCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATTCCCTTCACCGAATTCCCCCATTTTTTAGCATGTCATTGTCTTTAGTTTCCTTGGATGTAGAGTGTGATAATTTGGGCTATCAATCACCAATGGTTAGCAGCCTTTCAAAACTTAGAAGTGTTCGGGTACAATGCCGCTCAGAGATTCAACTAACTCAAGAATTAAGAAGATTTCTTGACGATCTATATGATGTAAGCTTTACTGAATTGGGAGCAACATCATATACGTCACAGAACTCTGATCATTCCTTGAGATCGCTTTTGATTGGAATGGGAAGTTGTCACATAGTCATTGATACTCTTGGCCAGAGCATATCACAGGGATTGACAACCATTAATGATTCTAGTGATTTTTTCCTCTCGGGTGATAATTATCCTTCTTGGTTAGCCTATACAAGTGAAGGACCTTCAGTACTTTTTCAAGTTCCTGAGGATAGTGATTGTTGCATGAAGGGAATAACTTTATGTGTTGTTTATTCATCATCTGAAAAGATGGCAGCTGAATGTCTTACTAGTGTCTTGATCATTAATTACACAAAGTGCAATATCCAGATATACAGGCGAGACACAGCGATGTCCTTTAATGATGAAGATTGGCAAGGTATAATATCAAATCTAGGACCTGGTGACAATGTGGAGATTTTTGCTGCTTTTGGGCATGGATTGACTGTTAAGGAGACCGCTGTATATCTAACATATGGCTAG 2850 0.3853 MSSSSSSNHQWIYDVFINFRGEDTRRTFVSHLYASLSNAGINAFMDDKKLGKGLRLKPELLRAIEGSQIALVVLSKNYSSSCWCLNELDKIMECHITYGQVVLPIFYDVDPSDVRHQKGAFGKALEATAKERNEAEPVKKIVEFVLEKLDHTFLSITEFPVGLESRVQEVIAFIQNQSSKVCIIGIWGMGGSGKTTTAKVIYNRIHRKFVDRSFVENIREVCEKDRTGHIHLQEQLLSDVLNTKVKIHSIALGKNMIEKRLCGKRVLIVLDDVNKFEQLKALCGNRNVKEMDKSESLELFSWHAFRKASPRENFRELSRNVIAYCGGLPLALEVLGSYLYERTEQEWKSVLSKLERIPNDQVQEKLRISFDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLYAGIGIAVLIERSLVKVERNNKLRMHDLLRDMGREIVREGSTKEPGKRSRLWFHEDVHDVLTNNAGTETVEGLALKLQRTGRVCFSTNAFKEMKKLRLLKLDHVDLTGDYGYLSKQLRLVCWQGFAFKYIPDEFYLGNVVVIDLRYSNIKQIWKETKLLEKLKILNLSHSRYLTNTPDFSKLPNLEKLILKDCPSLSEVHQSIGDLNNLLLINLKDCTNISNLPRKIYELKFLKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTAVKEVPYSIIRSKSIGYISLCGYEGLSWDVFPSLIWSWMSPTMNSLHRIPPFFSMSLSLVSLDVECDNLGYQSPMVSSLSKLRSVRVQCRSEIQLTQELRRFLDDLYDVSFTELGATSYTSQNSDHSLRSLLIGMGSCHIVIDTLGQSISQGLTTINDSSDFFLSGDNYPSWLAYTSEGPSVLFQVPEDSDCCMKGITLCVVYSSSEKMAAECLTSVLIINYTKCNIQIYRRDTAMSFNDEDWQGIISNLGPGDNVEIFAAFGHGLTVKETAVYLTYG. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10200 949 Gene3D - 5 151 IPR035897 -
Seca4g10200 949 Pfam NB-ARC domain 164 283 IPR002182 GO:0043531
Seca4g10200 949 Pfam NB-ARC domain 287 358 IPR002182 GO:0043531
Seca4g10200 949 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 699 IPR044974 GO:0006952
Seca4g10200 949 Pfam TIR domain 13 135 IPR000157 GO:0007165
Seca4g10200 949 Gene3D - 152 292 IPR027417 -
Seca4g10200 949 PRINTS Disease resistance protein signature 563 579 - -
Seca4g10200 949 PRINTS Disease resistance protein signature 183 198 - -
Seca4g10200 949 PRINTS Disease resistance protein signature 325 339 - -
Seca4g10200 949 Gene3D - 293 374 IPR042197 -
Seca4g10200 949 Gene3D Ribonuclease Inhibitor 470 805 IPR032675 -
Seca4g10200 949 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 128 IPR035897 -
Seca4g10200 949 SMART till_3 12 148 IPR000157 GO:0007165
Seca4g10200 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 385 IPR027417 -
Seca4g10200 949 SUPERFAMILY L domain-like 481 761 - -
Seca4g10200 949 SUPERFAMILY "Winged helix" DNA-binding domain 361 467 IPR036390 -
Seca4g10200 949 ProSiteProfiles TIR domain profile. 11 149 IPR000157 GO:0007165
Seca4g10200 949 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10200 Seca-Chr4 236490166 236497398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10200 13 680 WRKY Transcription Factor Family AT4G12020 29.484 9.63e-71 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10200 - - tpra:123923836 1253.81