Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10189 ATGGCCGATGCTGGATCTGAAGTTGAAGTGGAAATGGAAGAAAAATCATGGCATCTTTTGGCAACTTTGCTTCGAATCGGCCACCCTGTATACCCTGAACACCTCGCTTCGCGATGTCAATTGTTCACCGCATCACCAGAATTCGTCCTCTACGTTACCTCTCTCCCTGCTTCTCCTCTCTCCGTTACGGATAACGGACTCGTTACTCCCTCCGCCACTGCCGTTTTCGCTCTCGCTAGGTTTTTCTCCCTCCGATTCCCCGATTCACAACCGTGCCGGCTCAGGAAACGGAAGTTGTTTTTCTCATCCGCCGATGGTACGCACTTCTTTCTTATTTTCTTATTTTCATTTTTTTGTGCATTGGGTGTACAGAGTTTTGCTGATGCTTCCAAGGCTATGATGAGAAGGAATTTCCCTGAAATAAAATTTGAATCGCTGGTTATGCATGGTGGGAATGCTATAATCCCATTGCGTATTGATACACTTGGACATGGAGAGTGTTCAAGTTGTCCAGCGCCAAAGTTTGGACATAGGGAAGCTGATAATGATGCCATCACAAGCATGTTTCGAGGAGGGATTTCTGGATCTGTGATTAAAGCTAGTGATAGTTTGCTCATGACTGGAAGTGACTTAACTTTTCGGAAGCTAGTAGGTATAGATAGATTCATGGAATGTAATCTCTTTGTAGACCGTTCTCTGTCAACTAGTTTCCAAGATCCCTCGCTACATAATGAGGGTGTTGTTGGTGGCAATATGATTGAGTTTGGGAAGAAAATGGATTACTTTGATACATTTAGGCAAGAATATCCTGGACAGAACATTGTTCATCCTGGTGGTGGTATTTGTGAAAGTAATACTTGCAAAGATCCAGTAAGAGAATCTAATGAAGATGAAGAAGTGGAAAGTAATTCAAAGAAAAGGTTCATTGGTTTTGGAACGGATAAAGAGAAGGAAGATGCTGCTCAGATGGTCAACCCTGAACTATGTGTTGAAGAACTGACTAAAGATTTGGAACCAGAAAACTGCATCCATGTGTTGAATTTGGACAAAAATGAGACACTGAGAAATATCGGGACTCAGTCTTCCAATAAAATAGCTCTGTCCTCTTCAAATCCAAAGCAGCTGCTGAAATCATCCTGCATAGTGAAGGGAGGACAGAAGAATGATATACACTTAAAGACACAAATTCTCACAGAGTCACTAGCCTGTAATAAAGTTGAAAATGCTCCAAAAAATGCTGATCACTGTAAAAATGATCAGAAATTTATTACGAAACACAAACTAAAGCAAAGCCGTAAAGAAAACATGGCAGAGATAGAAAGTATCTCCATGACCCAGAAGGTGGAAAAAAAAGTATATCCATCTTTTGAATCTTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGGACCGTTTACCGCGCTCGAAGAACTGAAGATGGAAAAAGACTTGCAATAAAATGTCCTCATAATAATGCTCATAAAAATCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGAGGTAAAAATTTCATAATAAAGTTTGAAGGTTCTTTCAAAAGTGGCAGTAGTACTAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGACCTGAGGTTTTGAAAAGGGAAATTGATATAATTCAGCTTCAGTGGTATGGGTATTGCATGTTCAGGGCCCTTGCGTGCTTGCACAAAGAGGGAGTCGTACACAGAGATGTTAAACCTGGAAACTTCCTTTTTTCGCGAAAGCTGAACAAAGGCTACCTTATTGACTTCAACCTTGCCATGGAAGCAATTAATTTATGCATCTACTCAGGTAAATCAAAACCAAGCCTTGATGGATCCAATAAAATTCCTCCCCCTTCTGGTTCTGCCCCCGTGGCCCAAGACAAGAACCTTGGAGGAAGCAAGTCTTTAACATTCAACAAAAGGGACTCGGCAGATTATAGGAAATTTTCTGACCTTAATAGACATGTGAAGGAAAAGGCTTATGCTGGTCATCTAAAAAATTGTCCTGATCAGGCTGGTGGGAGCTTACTTAGAGCACAAGGAACGGATGGCTCCGGTATAACCTCTGCGAAAGATGTTACTAGCACTAGGACTGCTTCTGCAGAAAGGCTTAGGGAACCGTTACCTTTTCGAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGAATTCTATGCAATGTGCGAATACTAGTTCAATAAAAGGTCCTTCTTCTCAAAGGAAAAGGGTTACTGCTCCTTCAGGCAAGGTAGATGGCAAGATTGCATATCTTACTCCGATGCCTCTACATTCATCTACAGTTGCTGCAGCATTATTAAGAAGCAAAGGAGATGGAAAACATAAAAGAGAGGGTTCGTGTGTTGGAACCAAGGGATTCCGTGCTCCAGAGGTTTTGCTTAGGTCTCAGTTTCAGGGACCTAAGGTTGATATTTGGTCGGCCGGAGTCACTCTACTATACATGGTGATTGGGAAAACTCCTTTCACTGGCGAACCAGAACAGAATATAAAAGACATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAAGTGGCCAAGCTACATGACCGTGAATCTTCTTTTCCAGTGGAATTACTTGATGACCGGTACTTGCAATCATGGGACATAGAAAGTTGGTGCAAGATTCACACAAAGAGACCAGAGTTTCTTGAGCATGCCCCGAAATCATTATTTGATTTAATAGACAAGTGTCTAACAGTAAATCCAAGAAGTAGGATTAGTGTTGAAGAAGTTCTAAGGCATGAATTCTTTGCTTCATGTAATGAGCTCATGAGGAAGCAAAGGATGATTCGGCGAGGTCTCAGTTCATAA 2850 0.4161 MADAGSEVEVEMEEKSWHLLATLLRIGHPVYPEHLASRCQLFTASPEFVLYVTSLPASPLSVTDNGLVTPSATAVFALARFFSLRFPDSQPCRLRKRKLFFSSADGTHFFLIFLFSFFCALGVQSFADASKAMMRRNFPEIKFESLVMHGGNAIIPLRIDTLGHGECSSCPAPKFGHREADNDAITSMFRGGISGSVIKASDSLLMTGSDLTFRKLVGIDRFMECNLFVDRSLSTSFQDPSLHNEGVVGGNMIEFGKKMDYFDTFRQEYPGQNIVHPGGGICESNTCKDPVRESNEDEEVESNSKKRFIGFGTDKEKEDAAQMVNPELCVEELTKDLEPENCIHVLNLDKNETLRNIGTQSSNKIALSSSNPKQLLKSSCIVKGGQKNDIHLKTQILTESLACNKVENAPKNADHCKNDQKFITKHKLKQSRKENMAEIESISMTQKVEKKVYPSFESFTIEEEEGSGGYGTVYRARRTEDGKRLAIKCPHNNAHKNHVNNERNMLERFGGKNFIIKFEGSFKSGSSTSDCFVLEHVEHDRPEVLKREIDIIQLQWYGYCMFRALACLHKEGVVHRDVKPGNFLFSRKLNKGYLIDFNLAMEAINLCIYSGKSKPSLDGSNKIPPPSGSAPVAQDKNLGGSKSLTFNKRDSADYRKFSDLNRHVKEKAYAGHLKNCPDQAGGSLLRAQGTDGSGITSAKDVTSTRTASAERLREPLPFRGRKELISLVQNSMQCANTSSIKGPSSQRKRVTAPSGKVDGKIAYLTPMPLHSSTVAAALLRSKGDGKHKREGSCVGTKGFRAPEVLLRSQFQGPKVDIWSAGVTLLYMVIGKTPFTGEPEQNIKDIAKLRGSEELWEVAKLHDRESSFPVELLDDRYLQSWDIESWCKIHTKRPEFLEHAPKSLFDLIDKCLTVNPRSRISVEEVLRHEFFASCNELMRKQRMIRRGLSS. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10189 949 Gene3D Phosphorylase Kinase; domain 1 460 536 - -
Seca4g10189 949 MobiDBLite consensus disorder prediction 689 709 - -
Seca4g10189 949 MobiDBLite consensus disorder prediction 618 644 - -
Seca4g10189 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Seca4g10189 949 Gene3D Transferase(Phosphotransferase) domain 1 764 946 - -
Seca4g10189 949 SMART serkin_6 459 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10189 949 Pfam Protein kinase domain 790 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10189 949 Pfam Protein kinase domain 461 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10189 949 SUPERFAMILY Protein kinase-like (PK-like) 441 934 IPR011009 -
Seca4g10189 949 ProSiteProfiles Protein kinase domain profile. 459 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10189 949 FunFam Probable serine/threonine-protein kinase DDB_G0291918 451 620 - -
Seca4g10189 949 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 417 938 - -
Seca4g10189 949 FunFam Kinase like protein 769 941 - -
Seca4g10189 949 Gene3D Transferase(Phosphotransferase) domain 1 537 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10189 Seca-Chr4 236212523 236219494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10189 794 930 Core Cell Cycle Gene Families AT3G48750 31.250 3.88e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Seca4g10189 Pkinase 8.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10189 K02214 - gmx:100795742 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10189 4 236212523 236219494 Seca4g10189 4 236212523 236219494 ECH