Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10171 ATGGAGCGGGTTGCAGAGCCGAAGGTACTTCCTCGAACCTTGCCTATCCTAGTTGAGGTATCATCACATTCTGCTGCGGCAAGAGAAACAGGTCAGAGACTTAAGGGGCAGGGGGTTTCAAGTGCTGAGGGGATTTCAGCAAGAGAAATGAATCAATTGTCAAAAGCAAGGGAGGTACCCATCTCACGTTTGGCCTCCATCAGAGAAGTGGCTCAATTATCAAATGCTAGGATATATTTGGTAAGAGAAGATATGGGGTTTGATACTAGAGGCTCTCAAGATTCTCTCTCCTTTGCGCCTTCTAGAACATGGAAAGGAAAGGCCTCTTTAGCAGAATCAGAAGAATTGATAACTGATGTTGAGACGTTGAAGGGCAGCAGTGATTCATTTGAGGATGGTGATCCAAGTTTATTCGCTGGTGCTAGTCATCCCCCAGAACCTATTGATACAGATCTTATGAGAACGGTTTATGTACCAATAGGTCAAAACAAATCTGAGGCTACATGCTTAATTAAGAATGTATCCTCCATGAAGGGTCCTTTCCTGGAAGATCTCTCAATTCGTGTTCCTGCCAAGAAACCAAGTACAGCTGTTCTTTCCCCTGAAGAAGGTCTGGTTGAGGAACTAAATGACATAGGGAACTTATCCTCACCATTTTCAGGTCCTCGAGCATCACAGAACACAGAGAACTCTCCCCTTGCTCCAGATTCTGAGGAAAAGGAATGTGTTTGGGATGCATCTTTGCCTCCTAGTGGTAATGTCAGTCCACTTAGTAGTATTGATAGTGTTGGTGTTGTCACAGCAATGAGCATTGCTAATAGTTGTGCCAGTACATATCGGAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTAGACAGGAATTGTGATAGTACTAAGGGGAGTGTAAGGGGGGATTCACTAGAGAGTGCAAAAACTAGTGCTAGTCGGGCAAGTGATAGCAGTGGCATTAGTGATGATAGCAACTGGAGCAACATTACTGGTGGTGCCAATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCCATCCGATTACGGGATGGAATTTTGGGCATGAGTCATTTTAGGTTACTCAAGCGACTTGGATGTGGTGATATTGGAAGTGTATATCTCTCAGAGCTGAGTGGAACTCGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCCTAGCAAGCAGAAAGAAGCTGACTAGAGCACAGACAGAGAGGGAGATACTGCAATTGCTGGACCATCCATTTCTGCCAACTTTGTATACACATTTTGAGACTGACAGATTCTCCTGTTTAGTAATGGAATATTGTCCTGGGGGTGATCTACACACCTTAAGGCAGAGGCAACCAGGAAAACATTTCTCTGAATATGCTGCACGCTTTTATGCCGCGGAGGTCCTGCTTGCTCTTGAGTATCTCCACATGCTTGGAGTTGTGTATAGAGACCTTAAACCTGAAAATGTGTTGGTTCGAGATGATGGTCACATAATGCTCTCAGATTTTGATCTCTCCCTCCGGTGTGCAGTTTCGCCAACTCTTATTAGAACTTCCTACGATAGTGACCCTTCAAAACGGGCTGGTGGTGCATTCTGTGTTCAACCTGCATGTATTGAGCCATCATCAGTATGCATCCAACCTGCATGTTTTATTCCTAGGTTCTTTCCTCAGAAAAACAAAAAGTCACGGAAGCCAAGAGCTGAACCTGGATTGCCTTCCAACACACTTCCAGAGCTTGTTGCTGAGCCTACTTCAGCTCGATCTATGTCCTTTGTGGGCACCCATGAATACCTTGCCCCTGAAATTATTAAAGGGGAAGGCCATGGCAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAACTATTATATGGTAAAACCCCTTTCAAAGGATCAGGAAACCGTGCTACACTTTTCAATGTGGTAGGTCAGCAGCTCAAGTTTCCTGAATCACCTGCAACCAGTTATGCTAGCCGGGATCTGATCCGTGGCTTGCTGGTGAAGGAACCACAGCATCGTCTTGGGGTTAAGAGGGGAGCAACTGAGATCAAGCAGCACCCCTTCTTTGAAGGTGTGAACTGGGCATTGATTAGGTGCAGCACACCACCAGAAGTGCCGAGACCAGTAGAAAATGAGCTACCAGGGAAGGTAGGACCAGTTGATAATACTGTTGGGGTTGGCAGCACTAGTAAGAGGATTGTAGGTAGTGGTACTGACATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAA 2289 0.4513 MERVAEPKVLPRTLPILVEVSSHSAAARETGQRLKGQGVSSAEGISAREMNQLSKAREVPISRLASIREVAQLSNARIYLVREDMGFDTRGSQDSLSFAPSRTWKGKASLAESEELITDVETLKGSSDSFEDGDPSLFAGASHPPEPIDTDLMRTVYVPIGQNKSEATCLIKNVSSMKGPFLEDLSIRVPAKKPSTAVLSPEEGLVEELNDIGNLSSPFSGPRASQNTENSPLAPDSEEKECVWDASLPPSGNVSPLSSIDSVGVVTAMSIANSCASTYRSDAITSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRASDSSGISDDSNWSNITGGANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDSDPSKRAGGAFCVQPACIEPSSVCIQPACFIPRFFPQKNKKSRKPRAEPGLPSNTLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENELPGKVGPVDNTVGVGSTSKRIVGSGTDMKSGGKYLDFEFF. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10171 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Seca4g10171 762 MobiDBLite consensus disorder prediction 298 343 - -
Seca4g10171 762 MobiDBLite consensus disorder prediction 298 338 - -
Seca4g10171 762 Gene3D Phosphorylase Kinase; domain 1 364 449 - -
Seca4g10171 762 Gene3D Transferase(Phosphotransferase) domain 1 594 716 - -
Seca4g10171 762 FunFam serine/threonine-protein kinase D6PK-like 594 717 - -
Seca4g10171 762 Pfam Protein kinase domain 596 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10171 762 Pfam Protein kinase domain 367 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10171 762 PANTHER FLIPPASE KINASE 1-RELATED 126 721 - -
Seca4g10171 762 MobiDBLite consensus disorder prediction 212 247 - -
Seca4g10171 762 FunFam serine/threonine-protein kinase D6PK-like 450 517 - -
Seca4g10171 762 SUPERFAMILY Protein kinase-like (PK-like) 348 720 IPR011009 -
Seca4g10171 762 ProSiteProfiles Protein kinase domain profile. 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10171 762 CDD STKc_phototropin_like 364 718 - -
Seca4g10171 762 SMART serkin_6 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10171 762 MobiDBLite consensus disorder prediction 213 233 - -
Seca4g10171 762 FunFam Serine/threonine-protein kinase D6PK-like 364 449 - -
Seca4g10171 762 Gene3D Transferase(Phosphotransferase) domain 1 450 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10171 Seca-Chr4 235846373 235850983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10171 1 762 AGC Kinase Gene Family AT2G44830 66.963 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g10171 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10171 - - gmx:100792314 1308.89