Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10169 ATGATGGACACTCACGCTGGAAACACCAATGTGAATGCCGTTGATCACTTTGAAACCGTCGCAACGTCGTCGTTTCAGGACGCTCCAGCTCCAGCAGCGTTCTCTCGGAGTTCGAGCTTCCGGAGCATTTTCTTGGCAGAGAATTGGGCGGAGCTGCCATTGAAGGAGGACGACGCCGATGACATGGTCATCTATGGCGCCTTGCGCGAGGCTGCCACCATAGGGTGGTTCCCTGCTAACAACAATGGTGTGATCAACAGTGTTGACACAACGGTTAAAGTGGAAAATGAGGGTGAAAACAATAGCACTGTGGTGGCACGTGAGGTACACGCGCCGGCAAGAAAGGGGTTGGGGTACCGTGGTGTGCGGAGGAGGCCCTGGGGGAAGTATGCAGCTGAAATAAGGGACCCTAAGAGAAATGGCGCTAGGGTGTGGCTTGGGACATATGAAACGGCTGAAGATGCAGCTTTGGCTTACGATCGAGCCGCGTTTGAGATGCGCGGCTCGAAAGCCAAGCTAAATTTCCCTCACTTAATCGGCTCGGAATACACCCGGCCGATTAGACACACTCGCGGTACATCTTTGCCGAGATCACTCTAG 600 0.54 MMDTHAGNTNVNAVDHFETVATSSFQDAPAPAAFSRSSSFRSIFLAENWAELPLKEDDADDMVIYGALREAATIGWFPANNNGVINSVDTTVKVENEGENNSTVVAREVHAPARKGLGYRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAEDAALAYDRAAFEMRGSKAKLNFPHLIGSEYTRPIRHTRGTSLPRSL. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10169 199 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Seca4g10169 199 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 FunFam Ethylene-responsive transcription factor 2 117 177 - -
Seca4g10169 199 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Seca4g10169 199 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Seca4g10169 199 PANTHER DNA-BINDING DOMAIN 97 181 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10169 Seca-Chr4 235772231 235772830 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10169 34 188 AP2-EREBP Transcription Factor Family AT2G44840 58.065 5.28e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g10169 AP2 9.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10169 K09286 - gmx:100793366 258.07