Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10165 ATGGCTTGTGATTTTTCTTCATTGGAATCTGTTCAACATTTCTTGCTTGAGCTTGAACATGATTCCCAAACCCTCATCGATGCTTCCAACCACCAAATCTGTTATTCATTTCCGAGCCCTAACTCTATTCCGAGCCCTAACTCTAGTCATGATTCAACGCAGCAGGCCGTAATTAGTAACGGTGGTGGTGATGTGAAGAAATCACCCGCGGACAAAAAGGGGTACTCCGCATTGGCGCGTGAATCTCACGCGCCACCGATGTGGAAGCACTACCGAGGCGTGAGGCGTAGGCCGTGGGGGAAGTTCGCGGCTGAGATAAGGGATCCGAAGAAGAACGGTGCTAGAGTTTGGCTTGGGACTTATGAGACGGAAGAGGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAGATGCGTGGCAGTAAAGCCAAGCTTAATTTTCCCCATCTCATTGGCTCCCACGCGCCGCCGGAGCCGGTGAGAGTGGTGACAGATTCTAAGCGGAAGTCGCCGGAGCCTTGTTCACCGGCTTCGGAGTCACAAGGGTCAAAGAAAAGGAAGAGGCTAATTGATGTATTGAATAGGTTAGCAAAGTATAGAAGCCAAGTGCTGCATGTGCTTGAATTGAGTTCACCGTCAAATGATGTTGATCAATGGTTGAATCAGTTAGAAGAACACTTGACTGTGGTGTAA 693 0.4877 MACDFSSLESVQHFLLELEHDSQTLIDASNHQICYSFPSPNSIPSPNSSHDSTQQAVISNGGGDVKKSPADKKGYSALARESHAPPMWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEPVRVVTDSKRKSPEPCSPASESQGSKKRKRLIDVLNRLAKYRSQVLHVLELSSPSNDVDQWLNQLEEHLTVV. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10165 230 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 PRINTS Ethylene responsive element binding protein signature 130 150 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 CDD AP2 89 150 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Seca4g10165 230 MobiDBLite consensus disorder prediction 37 61 - -
Seca4g10165 230 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Seca4g10165 230 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700|GO:0006355
Seca4g10165 230 MobiDBLite consensus disorder prediction 152 186 - -
Seca4g10165 230 PANTHER DNA-BINDING DOMAIN 55 184 IPR044808 GO:0003700|GO:0009873
Seca4g10165 230 MobiDBLite consensus disorder prediction 37 81 - -
Seca4g10165 230 FunFam Ethylene-responsive transcription factor 2 89 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10165 Seca-Chr4 235720432 235728978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10165 68 191 AP2-EREBP Transcription Factor Family AT2G44840 62.698 2.44e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g10165 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10165 K09286 - gmx:100527194 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10165 4 235720432 235728978 Seca4g10165 4 235720432 235728978 ECH