Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10164 ATGAATCTCGAGTTCAGTACTAGTCTTGAATCCGATCTTGCTCTTCTCGAATCCATTCGACGCTACCTCCTCCACGAAGATGAAGACTTCAATGCTCTTATGGCCATTTCCGCCACATCTCACGCCGTCAACCACGGGTCAACCTCTTCTTCAGCCACAGAGAGTGGCACTGCAGGCAGTGAACCAATGTCCACCACCCTTTACGATAACGCCGTTAACTCTCCGTTAATTTCATCGACCACAGTTAATCCTGCCTTGGGTGATTGCAGTGTTTCTTCTTCTACAGCTTCGCGTGAAATCCACGCGCGACCGAGTTGGCAGAGATACAAGGGAGTGAGGCGTAGGCCGTGGGGGAAATTTGCAGCGGAGATAAGAGATCCAAAGAAGAACGGCGCAAGGGTATGGCTAGGGACTTATGAAACGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCTTTCAAAATGCGCGGCTCAAAAGCTAAGCTCAATTTTCCACATTTGGTTGGTTCTGATGATCCTGAGCCATTCGTGACGGCTAAGCGGCGTGCACCACAGCCGTGTTTGGAGCCGAAAAGAAAAATGAGCCGAGTCAGCGTCATTGACACGTCAGATAAATGGGAAATGGAGTCTATGATGATATTCCACGGAATCATCTAA 660 0.4985 MNLEFSTSLESDLALLESIRRYLLHEDEDFNALMAISATSHAVNHGSTSSSATESGTAGSEPMSTTLYDNAVNSPLISSTTVNPALGDCSVSSSTASREIHARPSWQRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLVGSDDPEPFVTAKRRAPQPCLEPKRKMSRVSVIDTSDKWEMESMMIFHGII. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10164 219 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 CDD AP2 107 168 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 Gene3D AP2/ERF domain 107 168 IPR036955 GO:0003700|GO:0006355
Seca4g10164 219 PANTHER DNA-BINDING DOMAIN 55 181 IPR044808 GO:0003700|GO:0009873
Seca4g10164 219 FunFam Ethylene-responsive transcription factor 2 107 167 - -
Seca4g10164 219 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
Seca4g10164 219 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Seca4g10164 219 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10164 Seca-Chr4 235716205 235716864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10164 108 189 AP2-EREBP Transcription Factor Family AT2G44840 75.904 5.92e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g10164 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10164 K09286 - gmx:100527194 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10164 4 235716205 235716864 Seca4g10164 4 235716205 235716864 ECH
Seca4g10164 4 235716205 235716864 Seca2g00723 2 10700359 10700847 PCT