Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10160 ATGGAATCTTTTAATTCTGCATATATAAATAGATACTGTGCATATTGTTATGTATTTGTCTATATATGGCATGTATATTCTAAAATAATTACAATCATCAATATCTGGCAGGTTTTTGCCAAAGGTGTTGACAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATTGTGCAATTGTTTCAATGTTGGCAGACCCCAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACAGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCACCAGAACAGATTCTCAATCTTGCACATAACAAAGCAGAAATTAGACAGAAGGTTCATTCAATTATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCTCGCCAGGAAGTACCTGAGGGAAATAAGGACAGTCAAGGAGGACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTCAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGAACTAACATGTATCCTTCTTCATCATTGCTTGGTGAAAATAAAGATGAATTGGGTGCTGTCTCCATTGATGATCTCATTGAGAGTGCTGATGGTTTTGCTGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCCAGAAGTGCTGCTGACATAGTGCTAACAGAACCTGGCTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTATACAATATATGCTGTGTCTATCACCATTCGTATTGTGCTGGGTTTCATGTTACTTAACTGCTTTTGGAAATTTGACTTTCCTCCCTTTATGGTTCTTGTCATTGCCATTCTCAATGATGGTACCATCATGACAATATCCAAAGACAGAGTTAAGCCTTCTCCAGTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTATTCTTGGTAGCTACCTGGCTCTAATGACAGTGCTCTTCTTCTGGGTAGTTTTTGAAACAAACTTCTTTCCAAACATTCTGCTCCAGAACCATTTTGGTGTAAGACATTTCCGCGCCACTACAAATGATCCTGTTACTGATGAAATGAAACAAATGTTGGCATCTGCTGTCTATCTTCAAGTCAGTACAATTAGCCAAGCCTTAATCTTTGTGACACGCTCTAGGGGTTGGTCCTACACAGAAAGACCTGGTGTTTTGCTTGTTATTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCTGCCACTGCCACTTGGAAAATTGCTGGAATCAGAAGCATAGGTTGGGGCTGGACAGGAGTCATTTGGTTGTTCAATACTATAACTTATGTTTTTCTGGATCCTTTAAAGTTTGCTGTTCGTTATGCACTAAGTGGAAGGGCATGGAATCTGGTGGTAGACCAAAGAACTGCATTCACAAACAAAAATGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTGCTGAACAGAGAACCTTGCATGGCCTTCGCTCTGTTGAGTCAAAAACATACACAGAGAAACACACCTTTAGAGAAATAAACACATTGGCAGAAGAGGCTAGGAGGCGAGCAGAGATAGCAAGGTTGAGAGAGCTTCACACTCTTAAAGGTAGAGTGGAATCGTTTGCCAAGCTAAGGGGTTTGGACATTGATGCCATGAACGGGCACTATACTGTCTAA 1956 0.4182 MESFNSAYINRYCAYCYVFVYIWHVYSKIITIINIWQVFAKGVDKDMVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDAAGKMHRVSKGAPEQILNLAHNKAEIRQKVHSIIDKFAERGLRSLAVARQEVPEGNKDSQGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDELGAVSIDDLIESADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIILGSYLALMTVLFFWVVFETNFFPNILLQNHFGVRHFRATTNDPVTDEMKQMLASAVYLQVSTISQALIFVTRSRGWSYTERPGVLLVIAFVIAQLVATVISATATWKIAGIRSIGWGWTGVIWLFNTITYVFLDPLKFAVRYALSGRAWNLVVDQRTAFTNKNDFGREAREAAWAAEQRTLHGLRSVESKTYTEKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10160 651 SUPERFAMILY HAD-like 131 322 IPR036412 -
Seca4g10160 651 FunFam Plasma membrane ATPase 30 176 - -
Seca4g10160 651 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 24 182 IPR023299 GO:0000166
Seca4g10160 651 Gene3D - 600 651 - -
Seca4g10160 651 FunFam Plasma membrane ATPase 169 323 - -
Seca4g10160 651 Pfam haloacid dehalogenase-like hydrolase 106 289 - -
Seca4g10160 651 NCBIfam HAD-IC family P-type ATPase 250 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 506 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca4g10160 651 PANTHER CALCIUM-TRANSPORTING ATPASE 34 584 - -
Seca4g10160 651 PRINTS H+-transporting ATPase (proton pump) signature 133 151 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 PRINTS H+-transporting ATPase (proton pump) signature 247 263 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 PRINTS H+-transporting ATPase (proton pump) signature 306 331 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 PRINTS H+-transporting ATPase (proton pump) signature 275 291 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 PRINTS H+-transporting ATPase (proton pump) signature 461 482 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g10160 651 Gene3D - 262 547 - -
Seca4g10160 651 Gene3D - 32 176 IPR023299 GO:0000166
Seca4g10160 651 SUPERFAMILY Calcium ATPase, transmembrane domain M 324 548 IPR023298 -
Seca4g10160 651 PRINTS P-type cation-transporting ATPase superfamily signature 171 182 - -
Seca4g10160 651 PRINTS P-type cation-transporting ATPase superfamily signature 298 310 - -
Seca4g10160 651 PRINTS P-type cation-transporting ATPase superfamily signature 275 294 - -
Seca4g10160 651 PRINTS P-type cation-transporting ATPase superfamily signature 193 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10160 Seca-Chr4 235672189 235676705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10160 34 651 Primary Pumps ATPases AT5G62670 76.090 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10160 K01535 - gmx:100806187 1075.08