Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10146 ATGAACGAGAATTCACAAAGCTATCACGTTGACATCAGTTTGGATGACATAAAAGATGTCATGGTAGAAGAAAGGTTTGATGAGAATGAGACTAATGGTGTTGCAATTGATGGGCCAGATGACTATGTGAAAGTTGACCCAATGACTCTAACAGAGGATGGCTTTATGAGTTTACATTTCCCTGATGTTGAGGTTGCCTATGAATTCTATAATTGGTATGGACAAAAGAAAGGATTTTCTGCAAGAAAAAACAAGGTAAGAAGAAACAAAAATCGAGATATGATTGAGAAGATTTTCCTTTGCCATAGAGAAGGTTTGAGAAAGAAAAAGGAAGATGACGATGTTGACACAACAGCCTGTGGAGATGTCAAACCTGTCCGTGAAGCAAGGCCAGAGACAAGAACCAGATGTCTTGCAAAAATGAAGGTTCATGTTGATACAGAAAGTGGGTGTTGGCATGTGACTAAGATTTGTGATGATCATAACCATAAACTTTTGGATGGAAAATATTCTGGGATGTTGCCAGCACATAGGAAATTGTCAAATGCTGACGTTATGTAG 561 0.3832 MNENSQSYHVDISLDDIKDVMVEERFDENETNGVAIDGPDDYVKVDPMTLTEDGFMSLHFPDVEVAYEFYNWYGQKKGFSARKNKVRRNKNRDMIEKIFLCHREGLRKKKEDDDVDTTACGDVKPVREARPETRTRCLAKMKVHVDTESGCWHVTKICDDHNHKLLDGKYSGMLPAHRKLSNADVM. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10146 186 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 18 182 - -
Seca4g10146 186 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10146 Seca-Chr4 235471504 235474869 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g10146 FAR1 4.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10146 - - mtr:120580664 130.954