Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10143 ATGGGTGAGAAAGAGGATGGTTTGAATTTGGGTTTGAGCTTGAGCTTAGGATGTGGAGAAAATGCAAGTAATAGTAATAATAATCAACCTCCTTTGAAGATGAGTTTCATGCACAAGCCTCCTCAATCGCTTCCAAACCAAAGGCCTTCCTTCAATAGCTTATTCCATTTTCACGATCGGAGCTCCGAGACGAGGTCGTTTCTTCGCGGAATAGACATGAACTCACCGCGGCCGGCGGCGGCCGCGTTCGACGACGAAAACGGAGTTTCATCGCCGAACAGCACCGTTTCGAGCATCAGTGGGAAGCGGAGCGAGAGAGAGGGTAACGGAGACGAGAACGATGCTGCTGAGAGGACCTCGTGTTCTCGGGGTGGAAGCGACGATGATGACGGCGTCGGTTGCGGCGGAGATGGCGGCGATGGTGACGGCGACACTTCAAGGAAGAAGCTGAGGTTATCGAAGGAACAGTCCATGGTGCTGGAAGAAACCTTCAAGGAACACAATACTCTGAATCCGAAACAAAAACAAGCATTGGCAAAGCAGCTGAATCTGAGGCCTAGACAGGTTGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGATGCTGTGAGACTCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTTCAAGAGCTTAGGGCATTGAAATTATCCCCACAGCTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCTACATCCTCCTCATCCGCGGCCGCGCCCTCTGCCCCGGCACCGACTAATCGCAGCCCAATGAGCCCGAGCATCCAGCGGCCGGTACCTGTCAACCCCTGGGCGGCAATGTCTATCCAACACCACCGTCCCCGGCCATAA 933 0.5177 MGEKEDGLNLGLSLSLGCGENASNSNNNQPPLKMSFMHKPPQSLPNQRPSFNSLFHFHDRSSETRSFLRGIDMNSPRPAAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAAERTSCSRGGSDDDDGVGCGGDGGDGDGDTSRKKLRLSKEQSMVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSAAAPSAPAPTNRSPMSPSIQRPVPVNPWAAMSIQHHRPRP. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10143 310 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Seca4g10143 310 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Seca4g10143 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 283 - -
Seca4g10143 310 SMART HOX_1 145 207 IPR001356 GO:0003677
Seca4g10143 310 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Seca4g10143 310 MobiDBLite consensus disorder prediction 266 310 - -
Seca4g10143 310 MobiDBLite consensus disorder prediction 1 147 - -
Seca4g10143 310 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Seca4g10143 310 MobiDBLite consensus disorder prediction 87 103 - -
Seca4g10143 310 MobiDBLite consensus disorder prediction 16 33 - -
Seca4g10143 310 FunFam Homeobox-leucine zipper protein 18 135 208 - -
Seca4g10143 310 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Seca4g10143 310 SUPERFAMILY Homeodomain-like 133 204 IPR009057 -
Seca4g10143 310 MobiDBLite consensus disorder prediction 40 57 - -
Seca4g10143 310 Coils Coil 209 239 - -
Seca4g10143 310 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Seca4g10143 310 Gene3D - 139 208 - -
Seca4g10143 310 MobiDBLite consensus disorder prediction 104 125 - -
Seca4g10143 310 MobiDBLite consensus disorder prediction 266 289 - -
Seca4g10143 310 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Seca4g10143 310 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10143 Seca-Chr4 235412195 235415401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10143 41 310 Homeobox Transcription Factor Family AT3G60390 63.251 1.14e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g10143 HD-ZIP_N 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10143 K09338 - gmx:100798480 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10143 4 235412195 235415401 Seca4g10143 4 235412195 235415401 ECH