Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10142 ATGAATGAACCCAGTAAAAGGCAAAGGAAACCCTGCACTGCCTACAGTCACATAATGAGAATGATGTTGTTCACCCGCCATCTCTGTAGCAGCAGCTGCGCCTCAAAGATTTCAAAAATCCCTTCAAGGTACAAGAAGGTTGCCGTTTCACAAGCTCAACAAGCCCTCACTGACTACCTCCACGCCACGAGGTGCCTCCCTTATGCCTTCGCTGATCAGATTGCCAAGAACTCCTTTCTCTCCCTTTCCAATCTCATTGCCAAGTTGGGATCTTTTTCCCCTTCAACTTTCTCCAAGACCTTTGACAAGTTCCTCAGGTACAACCCCATCAATGAGTTTGAGTTTTTCTTTGAAAGCATTGGCATTCACCACACCCACCTCCCTGCCTTGTTGCCCCACAACAAGTTCTTCTTTTCTGAAGATGGGTCACTTCTGGATGCTGCTTGTGCACTCTCTGAATTTGGGTTTCCCTGGGATAGGCTTGGTTTGCTGTATATGGAGAGTAGTTCTGTGTTCAGTATGAGTGCTTCTGACTTGAAGGGCAGGCTTTGTTGGTTCAAAAGATATGGTTTTTCCAATGTCCAAGTCGTTGGGATATGTTTTGCTTTCCCTTTTGTTTTTGGTGGGGAGGAAGGCCAGTTGGGTTCTGAGATTGATGGGTTATTGACTAGTCTGAAGTTGGTTTTTTTGGACTTTGATTTGGCAGGGTCTGTTGAGGGCAATGTGGAGGCTTGGCATGAGGTGTGTAGGAAAATCAAGGTGTTTTATGATTTGAATGGTGACAAGGGTAAGATATTGGAGCTCATTGGAAGGAATAAAGATGTCATTCTTGAGCATGGAGAAGGGGAGTTGGTTCAAAAAATAGAGTATTTTTGTAGGTTTGGTGTCAAGGAGGAGGATGCAACTCAGTTGATTCTGCAGGGACCAGAATTAGTCAATATTAATTTGGAAACACTGGTGATTAATGTGTTGAAACTGCTGAAACACTTTGGAATGAGCTCCAAAGATCTTGAGAATGTCAGAATGGAGTATGCTCATGTGTTGGGAACAACAAAAATGGCTAATCTGCCCAATATAATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTAATAAAGTCAAGGATGGGAATCATCAGCTGTTAGTTAGTTATATTACAAGCTATCCTAATGAAGACCATGATGAAGGTTATCAAGTTGGTTTAAAGACAATTCATGTTTCAAGAACCCCAACTCACAATATGAATAAATTAAATTTCCTGCATGCCATAGGCTTTGGGGAAAATGCTGTGACTATGAAAATCTTAAGTCACTTGCATGGAAGCAGTAGTGAGTTACAACAAAGATTTGATTGCCTTCTACATTCAGGAATTGAATTCTCAAAGCTCTCTAAGTTGGTTAGAATTCGACCAAAGATTCTAAGCCAAAGCCATGAAATTATAGAGAAAAAGATTAATTTCCTCTGTAAGGAAATGGGAAGCTCCATAGAGCTTTTGGATACTTTTCCAGCATTCCTATGTTTTGACTTAGAGAACCGCATCAAGCCTAGGTACAGATTCCATATGTGGGCTATAGAAAAGGGTCTGTGTACCAAAAATTATTCCATTGCAAGCATGATTGCAACCAGTGACAAGAATTTTGTTGCTCGCACTTTTAAAATTCACCCTGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCTCAGGAAATTGCTAGTATGA 1719 0.4124 MNEPSKRQRKPCTAYSHIMRMMLFTRHLCSSSCASKISKIPSRYKKVAVSQAQQALTDYLHATRCLPYAFADQIAKNSFLSLSNLIAKLGSFSPSTFSKTFDKFLRYNPINEFEFFFESIGIHHTHLPALLPHNKFFFSEDGSLLDAACALSEFGFPWDRLGLLYMESSSVFSMSASDLKGRLCWFKRYGFSNVQVVGICFAFPFVFGGEEGQLGSEIDGLLTSLKLVFLDFDLAGSVEGNVEAWHEVCRKIKVFYDLNGDKGKILELIGRNKDVILEHGEGELVQKIEYFCRFGVKEEDATQLILQGPELVNINLETLVINVLKLLKHFGMSSKDLENVRMEYAHVLGTTKMANLPNIMRALGLHEWFFNKVKDGNHQLLVSYITSYPNEDHDEGYQVGLKTIHVSRTPTHNMNKLNFLHAIGFGENAVTMKILSHLHGSSSELQQRFDCLLHSGIEFSKLSKLVRIRPKILSQSHEIIEKKINFLCKEMGSSIELLDTFPAFLCFDLENRIKPRYRFHMWAIEKGLCTKNYSIASMIATSDKNFVARTFKIHPAAPKHWFEQFYLRKLLV. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10142 572 PANTHER CGI-12 PROTEIN-RELATED 84 553 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 Gene3D Transcription termination factor 3, mitochondrial 370 565 IPR038538 -
Seca4g10142 572 Gene3D Transcription termination factor 3, mitochondrial 242 369 IPR038538 -
Seca4g10142 572 Gene3D Transcription termination factor 3, mitochondrial 88 231 IPR038538 -
Seca4g10142 572 Pfam mTERF 247 350 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 Pfam mTERF 415 546 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 SMART mt_12 495 529 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 SMART mt_12 162 192 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 SMART mt_12 463 494 IPR003690 GO:0003690|GO:0006355
Seca4g10142 572 FunFam Transcription termination factor MTEF18, mitochondrial 401 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10142 Seca-Chr4 235380866 235382618 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g10142 mTERF 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10142 - - gsj:114418754 709.138