Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10123 ATGCATGGGAAAAAAGACCAAGAGCATATAAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTACTGAACCATGTCAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTCCAAAGGACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTCCGACCCAACCTCAAGAATGGGTGCAAGTTTTCACTAGAGGAAGAAAGGATTGTCATAGAGTTGCAGGCACAATTTGGGAACAAGTGGGCTAAGATTGCATCCTATTTGTCAGGGAGAACAGATAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTACAGACATCAGCAACAAACTCCAAATCACAGAAAAACAAAACTAAAGTTCCAACACTTCTTGATGTCCCAACTTTGGAGGCTCCTAAGTTAAGTTCTTCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCAAGCTCATTATCCTGCATTGAGAATTCTGAAGTCATCAAAATGGTGCCATTACCTGATCTAATAAAATCACTTCCTAGTTCTGACACAAGCCTTGTTGAACAAGAGTTTATTACCCCTTATGAGAGCTATAAAACCACTGAACAGATTTCTTTCCCTCAGATATCAGAAGTCCAAACTGATCTTACATTCTTAATGGGAAGCCAAGATCTCTTGCCCAGAATTGATGAGTCAAGTTTTATTGATGTCTTTGGCCCTTTGGATACATCTGAGTTTGGAATGGGTCCACAACACCCCATTGGGTTCCCTTTCTTTGAGCCAACAACAGGAAGTTGTAGAATTGGGAATACAATTGATAACTACAAAAACGGTGATAGCTTCTTTGATGATTTTCCAGAGGACTTGTTTGATCACATGGAGCCACCTGCAAGCCCACCAAAGCTCTGA 930 0.4226 MHGKKDQEHIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILQTSATNSKSQKNKTKVPTLLDVPTLEAPKLSSSSEGEPSSKPQSSSLSCIENSEVIKMVPLPDLIKSLPSSDTSLVEQEFITPYESYKTTEQISFPQISEVQTDLTFLMGSQDLLPRIDESSFIDVFGPLDTSEFGMGPQHPIGFPFFEPTTGSCRIGNTIDNYKNGDSFFDDFPEDLFDHMEPPASPPKL. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10123 309 SMART sant 11 61 IPR001005 -
Seca4g10123 309 SMART sant 65 113 IPR001005 -
Seca4g10123 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Seca4g10123 309 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Seca4g10123 309 Pfam Myb-like DNA-binding domain 15 65 - -
Seca4g10123 309 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Seca4g10123 309 FunFam MYB transcription factor 12 64 - -
Seca4g10123 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Seca4g10123 309 Gene3D - 67 136 - -
Seca4g10123 309 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Seca4g10123 309 MobiDBLite consensus disorder prediction 145 166 - -
Seca4g10123 309 PANTHER TRANSCRIPTION FACTOR DUO1 4 308 - -
Seca4g10123 309 CDD SANT 68 107 IPR001005 -
Seca4g10123 309 CDD SANT 14 59 IPR001005 -
Seca4g10123 309 FunFam Transcription factor GAMYB 67 136 - -
Seca4g10123 309 Gene3D - 4 65 - -
Seca4g10123 309 Pfam Myb-like DNA-binding domain 68 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10123 Seca-Chr4 235076418 235078693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10123 1 306 MYB Transcription Factor Family AT3G60460 49.686 6.62e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g10123 Myb_DNA-bind_6 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10123 K09422 - gmx:100805384 466.463