Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10118 ATGCAGTATTGCGAGATGGGGGTTAGTATATTCTCAGATTTATACTTTCCAGCTTTATCTGCAGCTACTGCAATCATTTCCTTCAATTGTTTTTCTGCACTTCATAAGGAAAAGGGGAACCCAATTGATTGGGTGAGCACACATAGGTACCACCTTCTGATAAGGAGCTGTTGCTACCGTGAATTTCTCTTGGTGGGTCCTCACGTTAGGTCTTCTAGGTTACACGGTTTTCGGTGGTTGTCCTCACACATGGTCTGGTTTCTCCATGGAAGCTTTCTCTGGTCTTTGGGAGTTTGTCAAACTCTCTGCTACTTCTGGTGTTATGCTATCAGTTCTGATATTGATGACCGGAAATCTTCCGAATGCAGAGATTGCCGTGGATGCCTTGTCTATATGTATGACGATAAATGGTTTGGAATTGATGATTCCTCTGGCATTCTTTGCTGCAACTGGGTTCCATTATTTGATCAAATGGATGAGAGGATGCTGGATGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATAAGATGCTCTTCATAATTAGAGACCATCTTGATTCTTACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTACACAGTAAACAACTGAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTACATGGAGACGACACAAGAAAAGGAAAGAAGATGCTGAATTAAGGGCCAGGGAGAATCTAACAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGGGTGGGAAGCCAACATGGAAAGACAAAGGGGAGTTACAGTAGCACCAGTGACACCAGCTATGACAAGATGA 990 0.4333 MQYCEMGVSIFSDLYFPALSAATAIISFNCFSALHKEKGNPIDWVSTHRYHLLIRSCCYREFLLVGPHVRSSRLHGFRWLSSHMVWFLHGSFLWSLGVCQTLCYFWCYAISSDIDDRKSSECRDCRGCLVYMYDDKWFGIDDSSGILCCNWVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNKMLFIIRDHLDSYTTNGGRAGFFNSCRIGPVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQATWRRHKKRKEDAELRARENLTASEPETPTSGSGFGWEANMERQRGVTVAPVTPAMTR. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10118 329 ProSiteProfiles IQ motif profile. 263 291 IPR000048 GO:0005515
Seca4g10118 329 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 150 218 - -
Seca4g10118 329 CDD CAP_ED 154 258 IPR000595 -
Seca4g10118 329 ProSiteProfiles cAMP/cGMP binding motif profile. 154 233 IPR000595 -
Seca4g10118 329 MobiDBLite consensus disorder prediction 294 308 - -
Seca4g10118 329 MobiDBLite consensus disorder prediction 287 309 - -
Seca4g10118 329 SUPERFAMILY cAMP-binding domain-like 152 245 IPR018490 -
Seca4g10118 329 Gene3D Jelly Rolls 152 245 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10118 Seca-Chr4 235052008 235055140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10118 152 292 Ion Channels AT2G28260 73.810 4.00e-78 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10118 K05391 - gmx:100811847 268.855