Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10112 ATGTTTGGGCGTGGACCAAGGAAGAGTGATAACACCAAATATTATGATATTCTTGGTGTTTCAAAAAATGCTAATGAAGATGAAATCAAGAAAGCCTATAGAAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGGGATCCTGAGAAGTTCAAGGAATTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAAAAGAAAGAAGTGTATGACCAATATGGTGAAGACGCCCTTAAAGAAGGGATGGGTGGAGGAGCCTCATTTCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAGGCTTTGGTGGCGGTGGTAGTTCACGAGGTAGAAGACAGAAGCATGGGGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTACAATGGGACAACAAGGAAACTGTCTCTTTCTAGAAATGTATTATGCTCAAAATGTAAAGGGAAAGGTTCCAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACAGGTATGAAGATTACAAGAAGGCAGATTGGACTGGGCATGATTCAGCAAATGCAACATGTCTGTTCTGATTGCAGAGGAACTGGTGAGGTCATTAGTGAGAGAGATAGATGCCCTCAGTGCAAAGGAAACAAGATTACCCAGGAAAAGAAGGTGCTTGAGGTGCATGTTGAGAAGGGGATGCAGCAGGGTCAGAAGATTGTATTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATAGTTTTTGTCTTACAAGTAAAGGAGCACCCAAGGTTCAGGAGAGATCATGATGACCTCTATATTGATCACAATCTGAGCTTAACAGAGGCTCTCTGTGGCTTCCAGTTTGTTGTCACACATCTTGATGGGAGGCAACTATTGATCAAATCAAACCCTGGGGAAGTCATCAAGCCAGGTCAACATAAAGCAGTAAATGATGAGGGAATGCCACAACATAACAGGCCCTTCATGAAGGGGCGTCTTTACATCAAGTTTAATGTTGATTTCCCAGACTCAGGTTTTCTTCCCCCTGATAAATGTCAGTTATTAGAGAAGATATTGCCTCAAAAGTCCAGCAAGCACTTGTCAGATATGGAGTTGGATGATTGTGAGGAGACCATTTTGCGTGATGTCAACATTGCAGAGGAGGATAATCGAAGGCAGCAATACCGCGACCGCGAGGCATATGATGAAGATGATGATGAGACATCAATGCCTCGCGTGCAATGTGCTCAACAGTAG 1260 0.4302 MFGRGPRKSDNTKYYDILGVSKNANEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKEVYDQYGEDALKEGMGGGASFHNPFDIFESFFGGAGFGGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTRKLSLSRNVLCSKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCSDCRGTGEVISERDRCPQCKGNKITQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFRRDHDDLYIDHNLSLTEALCGFQFVVTHLDGRQLLIKSNPGEVIKPGQHKAVNDEGMPQHNRPFMKGRLYIKFNVDFPDSGFLPPDKCQLLEKILPQKSSKHLSDMELDDCEETILRDVNIAEEDNRRQQYRDREAYDEDDDETSMPRVQCAQQ. 420
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10112 419 CDD DnaJ 14 63 IPR001623 -
Seca4g10112 419 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Seca4g10112 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Seca4g10112 419 Gene3D - 110 262 - -
Seca4g10112 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 400 IPR044713 GO:0006457|GO:0030544
Seca4g10112 419 CDD DnaJ_C 119 345 - -
Seca4g10112 419 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Seca4g10112 419 Gene3D DnaJ domain 10 109 IPR036869 -
Seca4g10112 419 MobiDBLite consensus disorder prediction 390 419 - -
Seca4g10112 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 344 IPR008971 GO:0006457|GO:0051082
Seca4g10112 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Seca4g10112 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca4g10112 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Seca4g10112 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 371 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca4g10112 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Seca4g10112 419 FunFam DnaJ subfamily A member 2 262 344 - -
Seca4g10112 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Seca4g10112 419 FunFam DnaJ subfamily A member 2 148 214 - -
Seca4g10112 419 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Seca4g10112 419 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Seca4g10112 419 FunFam dnaJ protein homolog 10 109 - -
Seca4g10112 419 SMART dnaj_3 12 66 IPR001623 -
Seca4g10112 419 Gene3D - 263 344 - -
Seca4g10112 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Seca4g10112 419 SUPERFAMILY Chaperone J-domain 9 109 IPR036869 -
Seca4g10112 419 MobiDBLite consensus disorder prediction 390 411 - -
Seca4g10112 419 Pfam DnaJ domain 13 71 IPR001623 -
Seca4g10112 419 Gene3D - 148 214 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g10112 Seca-Chr4 234850895 234856171 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10112 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 4.20e-10 59.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10112 K09503 - gmx:100800590 747.273