Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10111 ATGGAAAGTGATGCTGAAGACAACTACTTTGCCACATCCTCCTCCTCCCCCTCCTCCACTCCCACCAACACTTCTAGCACATCCTCTTCAACATCTCCAACTTCAAATTCAGATTCATGCACCAAGAAGCAAGACTCAAAACCTCCTCTAAATGATTCAACCACATCTCAAAACATGAAAAATGAAAAGGACTCAAAGGAGTGCAAGAAGAGGCAGAGAAGTGAAAGTGATAGCAAGCACCCAACATATAGAGGAGTAAGAATGAGGAATTGGGGAAAGTGGGTATCAGAGATTCGTGAGCCAAGAAAGAAGTCAAGAATTTGGCTTGGAACATACCCAACAGCAGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATCAAAGGCCATTCAGCATACCTCAATTTCCCTGAATTGGCACAAGAACTTCCAAGGCCAGCTACCACATCTCCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACTGCCTTTGAGGAGATTAAGTATTGTCAAGATGAAGATGAACCAAATCAAGCAGAACAGGCTTCATCTTCCACTATATCTATGGATAGTACTCAAGAATCTTCAAGTTCTCCCTCTGCCAATGATGATGCAACATTGTTTGATTTACCAGATCTTTTTCCTGATGGAAACCATGGACTCTGCTCCTACTCTTCTTCTTCTTGGCATTTATGTGCTGTGGATAGTGGATTCAGGGTTGAGGAATCATATTTTTGGGAGAACTACTAG 762 0.4278 MESDAEDNYFATSSSSPSSTPTNTSSTSSSTSPTSNSDSCTKKQDSKPPLNDSTTSQNMKNEKDSKECKKRQRSESDSKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPATTSPKDIQAAAAKAANTAFEEIKYCQDEDEPNQAEQASSSTISMDSTQESSSSPSANDDATLFDLPDLFPDGNHGLCSYSSSSWHLCAVDSGFRVEESYFWENY. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10111 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 60 219 - -
Seca4g10111 253 MobiDBLite consensus disorder prediction 1 86 - -
Seca4g10111 253 Pfam AP2 domain 81 132 IPR001471 GO:0003700|GO:0006355
Seca4g10111 253 MobiDBLite consensus disorder prediction 59 84 - -
Seca4g10111 253 MobiDBLite consensus disorder prediction 180 208 - -
Seca4g10111 253 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Seca4g10111 253 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Seca4g10111 253 MobiDBLite consensus disorder prediction 175 208 - -
Seca4g10111 253 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g10111 253 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Seca4g10111 253 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Seca4g10111 253 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Seca4g10111 253 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Seca4g10111 253 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Seca4g10111 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10111 Seca-Chr4 234763945 234764706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10111 70 249 AP2-EREBP Transcription Factor Family AT2G44940 55.238 1.10e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g10111 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10111 - - gmx:100801129 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10111 4 234763945 234764706 Seca4g10111 4 234763945 234764706 ECH