Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10104 ATGTTGGACTACGAATGGGGAAACCCATCCACGATAATGCTCACCGGAAATGAAGACGGCTCTGCAGCTGCCTCCGATCAAACCCACCGTCAAATCTTCGACCACTACAACTCTCACACCTTGCTACCCGACCACTTCCTACATGGGCCTGGGCCCACACACAACAACACCACTACAACCACAGCCTCAAACACCGTGGATTTCACTCAGCACCACCACTTCAACCCACAAGCCCACCACCACCTCCACCACACTTTCTTCGACCCACGCGCCTTCCATGGCGCGTCCTCAACCTCCTACCCTCCGCCCCAACCACCACCTCCTTCCATGCTCTCCCTCGACCCCTTGAACGGGCCCGGCACAGGGCCCGGGCTCCTCCTCGTGCCTAAGTCCGAGGACGTCGGTCGGCCCATGGACTTCGTGGGCTCGAGAATTGGCCTCAACCTGGGAGGCCGCACGTACTTCTCATCCTCTGAAGACGACTTCGTGAGCCGGCTCTACCGCCGGTCCAGGCCCGCTGAACCGGGCTCGACCGCTTCCTCGAACTCGCCCAGGTGCCAGGCCGAAGGATGCAATGCTGATCTGTCACAGGCAAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTTCACTCCAAGGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAACCAACTCAAGAAATTCAGAAAACTCAGACTAGTTTGGATAATGTTGCAAGTACAACCTTCTCTTAA 852 0.5657 MLDYEWGNPSTIMLTGNEDGSAAASDQTHRQIFDHYNSHTLLPDHFLHGPGPTHNNTTTTTASNTVDFTQHHHFNPQAHHHLHHTFFDPRAFHGASSTSYPPPQPPPPSMLSLDPLNGPGTGPGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKTQTSLDNVASTTFS. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10104 283 FunFam Squamosa promoter-binding-like protein 14 177 247 - -
Seca4g10104 283 Gene3D - 176 247 IPR036893 GO:0003677|GO:0005634
Seca4g10104 283 ProSiteProfiles Zinc finger SBP-type profile. 183 260 IPR004333 GO:0003677
Seca4g10104 283 MobiDBLite consensus disorder prediction 264 283 - -
Seca4g10104 283 MobiDBLite consensus disorder prediction 93 112 - -
Seca4g10104 283 Pfam SBP domain 186 259 IPR004333 GO:0003677
Seca4g10104 283 SUPERFAMILY SBT domain 184 264 IPR036893 GO:0003677|GO:0005634
Seca4g10104 283 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 114 265 IPR044817 GO:0003677
Seca4g10104 283 MobiDBLite consensus disorder prediction 253 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10104 Seca-Chr4 234641785 234643755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10104 1 233 SBP-box Gene Family AT1G02065 45.635 1.84e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g10104 SBP 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10104 - - gmx:100778566 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10104 4 234641785 234643755 Seca4g10104 4 234641785 234643755 ECH