Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10103 ATGTTCTGTGATCTTAACAACCATATCATCAGAGAGGAAAATAACGGAAACAGTAACAGTTCTATTTGTTACTACTATTCATCATCATGGCAACCCTTACCCACTTCTTCTACCTGCACCCTCCTTAACAACACCACCACCACTGCGGCAGAGACTTCTCACAACCACCACCAGCTACTACCTCTGTATGTGCAGGGTGATTGTTCCCACGTGCAGCCTGACCCACATCTCACGTGTTTGTATCTTGGTAAGAGGCATTACTTAGAGGACACTACTACTGATCATACTCCTCATCCGGGGGAGCGACACGTGTGCGGTGGTGATGGCCTTGGCTTAAAGGCTAATAAGAGAGCCAGACCCTTCTATGGCAGCGGTGGGGCTGCAGCTGCCGGCGGAGAGAAGGCGGCGGCGATGGTTCCTAGATGTCAGGTGGAGGGGTGCCACGTGGCACTGTTGAACGCGAAGGAATACCACAGGAGGCACAAAGTTTGTGATATGCATTCCAAGGCAGCCAAAGTTGTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGACGATTCAAAGAGGAGTTGTAGGAGGAGACTAGCGGGCCATAATCAGCGAAGGAGAAAAACCTCTCATTCTCATTCTCTTACTGCAGGGAATTCTAGTCAAGGGTGTGCTCTCTCTCTTCTGTCATGTGGGAGTGATTCTTGGCTTTGTGATGATGCTGATTTTTCCATAAGATGCAGTGCAGCATTACGCGAATTGATAGCAGAAAACCGTGTTTCAGCCTCTTCCTTCATGACTAGACATTTGCCCCACCAACACCAAGCAGTGGAGGAAGAGGTACGGCATCAACATGATCATAATCAGGACTTCAATTATTTTCCCCAGACACAATAA 918 0.4847 MFCDLNNHIIREENNGNSNSSICYYYSSSWQPLPTSSTCTLLNNTTTTAAETSHNHHQLLPLYVQGDCSHVQPDPHLTCLYLGKRHYLEDTTTDHTPHPGERHVCGGDGLGLKANKRARPFYGSGGAAAAGGEKAAAMVPRCQVEGCHVALLNAKEYHRRHKVCDMHSKAAKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNQRRRKTSHSHSLTAGNSSQGCALSLLSCGSDSWLCDDADFSIRCSAALRELIAENRVSASSFMTRHLPHQHQAVEEEVRHQHDHNQDFNYFPQTQ. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10103 305 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Seca4g10103 305 MobiDBLite consensus disorder prediction 206 225 - -
Seca4g10103 305 MobiDBLite consensus disorder prediction 279 296 - -
Seca4g10103 305 Pfam SBP domain 142 215 IPR004333 GO:0003677
Seca4g10103 305 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 253 IPR044817 GO:0003677
Seca4g10103 305 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Seca4g10103 305 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Seca4g10103 305 FunFam Squamosa promoter-binding-like protein 14 133 203 - -
Seca4g10103 305 MobiDBLite consensus disorder prediction 278 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10103 Seca-Chr4 234547112 234552012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10103 139 215 SBP-box Gene Family AT2G42200 71.429 1.01e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g10103 SBP 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10103 - - gmx:100780159 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10103 4 234547112 234552012 Seca4g10103 4 234547112 234552012 ECH